6S0K

Ribosome nascent chain in complex with SecA


ChainDomainClassArchitectureTopologyHomology
J3.30.70.1730 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein L10, N-terminal RNA-binding domain
K3.30.1550.10 Alpha Beta 2-Layer Sandwich Ribosomal protein L11, N-terminal domain Ribosomal protein L11/L12, N-terminal domain
K1.10.10.250 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ribosomal protein L11/L12, C-terminal domain
M2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14/L23
O3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase domain 3
P3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17 Chain: A,
Q3.30.420.100 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5
U3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22 Chain A
V3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domain
X2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25 Chain P
BA3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30 Chain: A,
DA2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Ribosomal protein L33
EA1.10.287.3980 Mainly Alpha Orthogonal Bundle Helix Hairpins
D2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
D4.10.950.10 Few Secondary Structures Irregular Ribosomal protein L2 domain 3

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
JPF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
KPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
KPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
LPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
MPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
NPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
OPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
PPF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
QPF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
RPF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
SPF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
TPF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
UPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
VPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WPF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
WPF00467KOW motif (KOW)KOW motif- Family
XPF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
YPF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
ZPF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
AAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BAPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
CAPF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
DAPF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
EAPF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
FAPF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
GAPF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
HAPF01043SecA preprotein cross-linking domain (SecA_PP_bind)SecA preprotein cross-linking domainThe SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domai ...The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [1].
Domain
HAPF07517SecA DEAD-like domain (SecA_DEAD)SecA DEAD-like domainSecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner [1,2]. This do ...SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner [1,2]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the Pfam:PF00270 [3].
Domain
HAPF02810SEC-C motif (SEC-C)SEC-C motif- Family
HAPF07516SecA Wing and Scaffold domain (SecA_SW)SecA Wing and Scaffold domain- Family
DPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
DPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
EPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
FPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
GPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
GPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
HPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
IPF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
IPF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
2tRNA-CCAnone none none
I50S ribosomal protein L10
J50S ribosomal protein L11
K50S ribosomal protein L13
L50S ribosomal protein L14
M50S ribosomal protein L15
N50S ribosomal protein L16
O50S ribosomal protein L17
P50S ribosomal protein L18
Q50S ribosomal protein L19
R50S ribosomal protein L20
A23S ribosomal RNAnone none none
S50S ribosomal protein L21
T50S ribosomal protein L22
U50S ribosomal protein L23
V50S ribosomal protein L24
W50S ribosomal protein L25
X50S ribosomal protein L27
Y50S ribosomal protein L28
Z50S ribosomal protein L29
a50S ribosomal protein L30
b50S ribosomal protein L32
B5S ribosomal RNAnone none none
c50S ribosomal protein L33
d50S ribosomal protein L34
e50S ribosomal protein L35
f50S ribosomal protein L36
hProtein translocase subunit SecA
kCytoskeleton protein RodZnone none none
C50S ribosomal protein L2
D50S ribosomal protein L3
E50S ribosomal protein L4
F50S ribosomal protein L5
G50S ribosomal protein L6
H50S ribosomal protein L9