Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth Z]SCOP2 FamilyMediator of RNA polymerase II transcription subunit 318105982 4005652 SCOP2 (2022-06-29)
H [auth Z]SCOP2 SuperfamilyMediator of RNA polymerase II transcription subunit 318105983 3002846 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth U]PF11221e6xp5U1 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: RNA polymerase II holoenzyme component SRB7 (MED21)F: PF11221ECOD (1.6)
C [auth F]PF04934e6xp5F1 A: extended segmentsX: Mediator of RNA polymerase II transcription subunit 6 (From Topology)H: Mediator of RNA polymerase II transcription subunit 6 (From Topology)T: Mediator of RNA polymerase II transcription subunit 6F: PF04934ECOD (1.6)
H [auth Z]PF05669e6xp5Z1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: PF05669ECOD (1.6)
I [auth H]PF10232e6xp5H1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 8 (From Topology)H: Mediator of RNA polymerase II transcription subunit 8 (From Topology)T: Mediator of RNA polymerase II transcription subunit 8F: PF10232ECOD (1.6)
J [auth K]PF10280e6xp5K1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 11 (From Topology)H: Mediator of RNA polymerase II transcription subunit 11 (From Topology)T: Mediator of RNA polymerase II transcription subunit 11F: PF10280ECOD (1.6)
K [auth R]PF09637e6xp5R1 A: a+b complex topologyX: mRNA triphosphatase CET1-related (From Topology)H: mRNA triphosphatase CET1-related (From Topology)T: mRNA triphosphatase CET1-relatedF: PF09637ECOD (1.6)
L [auth V]PF06179e6xp5V1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription subunit 22 (From Topology)H: Mediator of RNA polymerase II transcription subunit 22 (From Topology)T: Mediator of RNA polymerase II transcription subunit 22F: PF06179ECOD (1.6)
D [auth G]PF05983e6xp5G2 A: alpha duplicates or obligate multimersX: Mediator hinge subcomplex-like (From Homology)H: Mediator hinge subcomplex-likeT: MED7 hinge regionF: PF05983ECOD (1.6)
D [auth G]PF05983e6xp5G1 A: a+b complex topologyX: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology)T: Mediator of RNA polymerase II transcription submodule Med7N/31F: PF05983ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth U]PF11221Subunit 21 of Mediator complex (Med21)Subunit 21 of Mediator complex- Family
B [auth D]PF10018Vitamin-D-receptor interacting Mediator subunit 4 (Med4)Vitamin-D-receptor interacting Mediator subunit 4- Family
C [auth F]PF04934MED6 mediator sub complex component (Med6)MED6 mediator sub complex component- Family
E [auth I]PF07544RNA polymerase II transcription mediator complex subunit 9 (Med9)RNA polymerase II transcription mediator complex subunit 9- Family
F [auth N]PF08638Mediator complex subunit MED14 (Med14)Mediator complex subunit MED14- Family
G [auth Q]PF10156Subunit 17 of Mediator complex (Med17)Subunit 17 of Mediator complex- Family
H [auth Z]PF05669SOH1 (Med31)SOH1- Family
I [auth H]PF10232Mediator of RNA polymerase II transcription complex subunit 8 (Med8)Mediator of RNA polymerase II transcription complex subunit 8- Family
J [auth K]PF10280Mediator complex protein (Med11)Mediator complex protein- Family
K [auth R]PF09637Med18 protein (Med18)Med18 proteinMed18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ...Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators [1].
Domain
L [auth V]PF06179Surfeit locus protein 5 subunit 22 of Mediator complex (Med22)Surfeit locus protein 5 subunit 22 of Mediator complex- Family
D [auth G]PF05983MED7 protein (Med7)MED7 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth U]Mediator of RNA polymerase II transcription subunit 21- -
B [auth D]Mediator of RNA polymerase II transcription subunit 4
C [auth F]Mediator of RNA polymerase II transcription subunit 6
E [auth I]Mediator of RNA polymerase II transcription subunit 9
F [auth N]Mediator of RNA polymerase II transcription subunit 14
G [auth Q]Mediator of RNA polymerase II transcription subunit 17
H [auth Z]Mediator of RNA polymerase II transcription subunit 31
I [auth H]Mediator of RNA polymerase II transcription subunit 8
J [auth K]Mediator of RNA polymerase II transcription subunit 11
K [auth R]Mediator of RNA polymerase II transcription subunit 18
L [auth V]Med22
M [auth a]Mediator of RNA polymerase II transcription subunit 1
N [auth b]Unknown peptide---
O [auth c]HEAT---
D [auth G]Mediator of RNA polymerase II transcription subunit 7