5OG6

Cu nitrite reductase serial data at varying temperatures RT 0.24MGy


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5298100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties
Matthew coefficientSolvent content
2.0339.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.259α = 90
b = 96.259β = 90
c = 96.259γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS 6M2015-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.8DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8548.1399.50.0980.994.73.325531
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.999.30.4680.551.43.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5I6K1.8548.1324169124899.040.179350.17710.22298RANDOM22.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.947
r_dihedral_angle_4_deg19.609
r_dihedral_angle_3_deg13.174
r_dihedral_angle_1_deg7.751
r_long_range_B_refined5.602
r_long_range_B_other5.596
r_scangle_other3.359
r_mcangle_it2.245
r_mcangle_other2.244
r_scbond_it2.061
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.947
r_dihedral_angle_4_deg19.609
r_dihedral_angle_3_deg13.174
r_dihedral_angle_1_deg7.751
r_long_range_B_refined5.602
r_long_range_B_other5.596
r_scangle_other3.359
r_mcangle_it2.245
r_mcangle_other2.244
r_scbond_it2.061
r_scbond_other2.027
r_angle_refined_deg1.645
r_mcbond_it1.416
r_mcbond_other1.413
r_angle_other_deg0.997
r_chiral_restr0.09
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_bond_other_d0.008
r_gen_planes_other0.006
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2566
Nucleic Acid Atoms
Solvent Atoms131
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata collection
XDSdata reduction
Aimlessdata scaling
REFMACphasing