5NC

5-AZA-CYTIDINE-5'MONOPHOSPHATE

Created:	1999-07-08
Last modified:	2011-06-04

Find Related PDB Entry
1 entries where 5NC is found in a polymer sequence

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	33
Chiral Atom Count	3
Bond Count	34
Aromatic Bond Count	0

2D diagram of 5NC

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	5-AZA-CYTIDINE-5'MONOPHOSPHATE
Systematic Name (OpenEye OEToolkits)	[(2R,3S,5R)-5-(4-amino-2-oxo-1,3,5-triazin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₈ H₁₃ N₄ O₇ P
Molecular Weight	308.185
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	10.04	O=C1N=C(N=CN1C2OC(C(O)C2)COP(=O)(O)O)N
SMILES	CACTVS	3.341	NC1=NC(=O)N(C=N1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
SMILES	OpenEye OEToolkits	1.5.0	C1C(C(OC1N2C=NC(=NC2=O)N)COP(=O)(O)O)O
Canonical SMILES	CACTVS	3.341	NC1=NC(=O)N(C=N1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
Canonical SMILES	OpenEye OEToolkits	1.5.0	C1[C@@H]([C@H](O[C@H]1N2C=NC(=NC2=O)N)COP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C8H13N4O7P/c9-7-10-3-12(8(14)11-7)6-1-4(13)5(19-6)2-18-20(15,16)17/h3-6,13H,1-2H2,(H2,9,11,14)(H2,15,16,17)/t4-,5+,6+/m0/s1
InChIKey	InChI	1.03	JQHZISUSXMJEPR-KVQBGUIXSA-N

Related Resource References

Resource Name	Reference
PubChem	125632

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.