3OJV
Crystal Structure of FGF1 complexed with the ectodomain of FGFR1c exhibiting an ordered ligand specificity-determining betaC'-betaE loop
- PDB DOI: https://doi.org/10.2210/pdb3OJV/pdb
- Classification: Cytokine/Signaling Protein
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2010-08-23 Released: 2011-12-28 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.309 
- R-Value Work: 0.251 
- R-Value Observed: 0.251 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Heparin-binding growth factor 1 | 136 | Homo sapiens | Mutation(s): 0  Gene Names: FGF1, FGFA | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P05230 (Homo sapiens) Explore P05230  Go to UniProtKB:  P05230 | |||||
PHAROS:  P05230 GTEx:  ENSG00000113578  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05230 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Basic fibroblast growth factor receptor 1 | 226 | Homo sapiens | Mutation(s): 1  Gene Names: FGFBR, FGFR1, FLG, FLT2 EC: 2.7.10.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11362 (Homo sapiens) Explore P11362  Go to UniProtKB:  P11362 | |||||
PHAROS:  P11362 GTEx:  ENSG00000077782  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11362 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose | E | 6 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G26920WX GlyCosmos:  G26920WX |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.309 
- R-Value Work: 0.251 
- R-Value Observed: 0.251 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 53.324 | α = 106.44 |
b = 53.421 | β = 106.4 |
c = 80.463 | γ = 94.44 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
AMoRE | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2011-12-28  Deposition Author(s): Beenken, A., Mohammadi, M.
Revision History (Full details and data files)
- Version 1.0: 2011-12-28
Type: Initial release - Version 1.1: 2012-03-07
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Refinement description, Structure summary