3V8C
Crystal structure of monoclonal human anti-rhesus D Fc IgG1 t125(yb2/0) double mutant (H310 and H435 in K)
- PDB DOI: https://doi.org/10.2210/pdb3V8C/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Rattus norvegicus
- Mutation(s): Yes 
- Deposited: 2011-12-22 Released: 2012-02-22 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.77 Å
- R-Value Free: 0.316 
- R-Value Work: 0.254 
- R-Value Observed: 0.258 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ig gamma-1 chain C region | 212 | Homo sapiens | Mutation(s): 2  Gene Names: HUMAN, IGHG1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01857 (Homo sapiens) Explore P01857  Go to UniProtKB:  P01857 | |||||
PHAROS:  P01857 GTEx:  ENSG00000211896  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01857 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A] E [auth A] J [auth A] M [auth A] N [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GAL Query on GAL | K [auth A], T [auth B] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N | |||
MAN Query on MAN | G [auth A], I [auth A], L [auth A], Q [auth B], R [auth B] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
GOL Query on GOL | F [auth A], H [auth A], O [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.77 Å
- R-Value Free: 0.316 
- R-Value Work: 0.254 
- R-Value Observed: 0.258 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.54 | α = 90 |
b = 79.4 | β = 90 |
c = 139.65 | γ = 90 |
Software Name | Purpose |
---|---|
DNA | data collection |
MOLREP | phasing |
REFMAC | refinement |
XDS | data reduction |
SCALA | data scaling |
Entry History 
Deposition Data
- Released Date: 2012-02-22  Deposition Author(s): Menez, R., Stura, E.A., Bourel, D., Siberil, S., Jorieux, S., De Romeuf, C., Ducancel, F., Fridman, W.H., Teillaud, J.L.
Revision History (Full details and data files)
- Version 1.0: 2012-02-22
Type: Initial release - Version 1.1: 2013-08-28
Changes: Database references - Version 1.2: 2014-10-08
Changes: Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-09-13
Changes: Data collection, Database references, Refinement description, Structure summary