4BKK

The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: FILAMENT 
  • Reconstruction Method: TOMOGRAPHY 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The Respiratory Syncytial Virus Nucleoprotein-RNA Complex Forms a Left-Handed Helical Nucleocapsid.

Bakker, S.E.Duquerroy, S.Galloux, M.Loney, C.Conner, E.Eleouet, J.F.Rey, F.A.Bhella, D.

(2013) J Gen Virol 94: 1734

  • DOI: https://doi.org/10.1099/vir.0.053025-0
  • Primary Citation of Related Structures:  
    4BKK

  • PubMed Abstract: 

    Respiratory syncytial virus (RSV) is an important human pathogen. Its nucleocapsid (NC), which comprises the negative sense RNA viral genome coated by the viral nucleoprotein N, is a critical assembly that serves as template for both mRNA synthesis and genome replication. We have previously described the X-ray structure of an NC-like structure: a decameric ring formed of N-RNA that mimics one turn of the helical NC. In the absence of experimental data we had hypothesized that the NC helix would be right-handed, as the N-N contacts in the ring appeared to more easily adapt to that conformation. We now unambiguously show that the RSV NC is a left-handed helix. We further show that the contacts in the ring can be distorted to maintain key N-N-protein interactions in a left-handed helix, and discuss the implications of the resulting atomic model of the helical NC for viral replication and transcription.


  • Organizational Affiliation

    Medical Research Council - University of Glasgow Centre for Virus Research, Church Street, Glasgow, G11 5JR, UK.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NUCLEOPROTEIN
B, C, D, E, F
B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
391Human respiratory syncytial virus A strain LongMutation(s): 0 
UniProt
Find proteins for P03418 (Human respiratory syncytial virus A (strain A2))
Explore P03418 
Go to UniProtKB:  P03418
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03418
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains LengthOrganismImage
RNA (161-MER)161Human respiratory syncytial virus A strain Long
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: FILAMENT 
  • Reconstruction Method: TOMOGRAPHY 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONDynamo
RECONSTRUCTIONeTomo

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-10-30
    Type: Initial release
  • Version 1.1: 2017-08-02
    Changes: Data collection, Source and taxonomy, Structure summary
  • Version 1.2: 2019-04-24
    Changes: Data collection, Source and taxonomy