4WI3
Structural mapping of the human IgG1 binding site for FcRn: hu3S193 Fc mutation I253A
- PDB DOI: https://doi.org/10.2210/pdb4WI3/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Deposited: 2014-09-25 Released: 2015-09-30 
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.296 
- R-Value Work: 0.216 
- R-Value Observed: 0.224 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ig gamma-1 chain C region | 208 | Homo sapiens | Mutation(s): 1  Gene Names: IGHG1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01857 (Homo sapiens) Explore P01857  Go to UniProtKB:  P01857 | |||||
PHAROS:  P01857 GTEx:  ENSG00000211896  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01857 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | C, D | 8 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G80858MF GlyCosmos:  G80858MF GlyGen:  G80858MF |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.296 
- R-Value Work: 0.216 
- R-Value Observed: 0.224 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.129 | α = 90 |
b = 75.908 | β = 90 |
c = 142.368 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-09-30  Deposition Author(s): Farrugia, W., Burvenich, I.J.G., Scott, A.M., Ramsland, P.A.
Funding Organization | Location | Grant Number |
---|---|---|
National Health and Medical Research Council (NHMRC, Australia) | Australia | 542512 |
National Health and Medical Research Council (NHMRC, Australia) | Australia | 1030469 |
Revision History (Full details and data files)
- Version 1.0: 2015-09-30
Type: Initial release - Version 1.1: 2017-09-13
Changes: Author supporting evidence, Data collection, Derived calculations - Version 1.2: 2020-01-08
Changes: Author supporting evidence, Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Structure summary