6KIU

Cryo-EM structure of human MLL1-ubNCP complex (3.2 angstrom)


Sequence Similarity Clusters for the Entities in PDB 6KIU

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 87 218
95 % 215 280 36
90 % 221 288 38
70 % 224 291 47
50 % 235 303 72
40 % 235 303 95
30 % 235 303 95
Entity #10 | Chains: T
Set1/Ash2 histone methyltransferase complex subunit ASH2 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 19166
95 % 2 6 17914
90 % 2 6 17557
70 % 2 6 16284
50 % 2 6 14667
40 % 2 6 13625
30 % 2 6 12419
Entity #11 | Chains: O
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 345 429 4
95 % 419 529 4
90 % 430 543 5
70 % 477 595 9
50 % 488 611 11
40 % 488 615 13
30 % 501 638 19
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 284 20
95 % 237 309 17
90 % 244 318 19
70 % 245 317 26
50 % 245 317 64
40 % 245 317 84
30 % 245 317 90
Entity #3 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 138 134
95 % 204 282 33
90 % 189 257 47
70 % 204 275 53
50 % 217 288 78
40 % 217 288 100
30 % 217 288 99
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 13 2581
95 % 44 79 334
90 % 210 279 43
70 % 220 290 44
50 % 225 297 74
40 % 225 297 96
30 % 225 297 96
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K
Histone-lysine N-methyltransferase 2A protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27831
95 % 5 8 11216
90 % 5 8 11102
70 % 3 6 13836
50 % 3 6 12621
40 % 3 6 11816
30 % 3 6 10858
Entity #8 | Chains: N
Retinoblastoma-binding protein 5 protein, length: 538 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 12303
95 % 4 8 11217
90 % 4 8 11103
70 % 4 8 10655
50 % 4 8 9890
40 % 4 8 9418
30 % 4 8 8760
Entity #9 | Chains: R
WD repeat-containing protein 5 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 102 250
95 % 109 113 297
90 % 111 115 305
70 % 111 115 344
50 % 111 115 398
40 % 111 115 419
30 % 111 115 434

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures