Sequence Similarity Clusters for the Entities in PDB 6KIU

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 80 205
95 % 187 250 42
90 % 193 258 43
70 % 196 261 51
50 % 205 271 79
40 % 205 271 95
30 % 205 271 95
Entity #10 | Chains: T
Set1/Ash2 histone methyltransferase complex subunit ASH2 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 17866
95 % 2 6 15382
90 % 2 6 15127
70 % 2 6 14229
50 % 2 6 12914
40 % 2 6 12055
30 % 2 6 11073
Entity #11 | Chains: O
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 313 397 4
95 % 385 495 6
90 % 393 506 6
70 % 436 554 9
50 % 452 575 10
40 % 452 579 12
30 % 463 596 18
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 253 23
95 % 205 275 34
90 % 212 284 36
70 % 213 283 46
50 % 213 283 76
40 % 213 283 92
30 % 213 283 92
Entity #3 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 128 112
95 % 179 255 38
90 % 172 238 66
70 % 184 253 54
50 % 191 260 85
40 % 191 260 100
30 % 191 260 100
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 13 2304
95 % 37 70 373
90 % 181 248 53
70 % 191 259 53
50 % 196 266 82
40 % 196 266 99
30 % 196 266 99
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: K
Histone-lysine N-methyltransferase 2A protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27621
95 % 5 8 11135
90 % 5 8 11024
70 % 3 6 13894
50 % 3 6 12641
40 % 3 6 11792
30 % 3 6 10853
Entity #8 | Chains: N
Retinoblastoma-binding protein 5 protein, length: 538 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 12587
95 % 4 8 10982
90 % 4 8 10219
70 % 4 8 9884
50 % 4 8 9198
40 % 4 8 8795
30 % 4 8 8193
Entity #9 | Chains: R
WD repeat-containing protein 5 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 88 252
95 % 95 99 295
90 % 97 101 310
70 % 97 101 346
50 % 97 101 414
40 % 97 101 439
30 % 97 101 456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures