SHH - sonic hedgehog

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for SHH View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q15465 HGNC Approved Gene Symbol: SHH 
Previous Symbols: HPE3, HLP3 Ensembl ENSG00000164690 
Synonyms : HHG1, SMMCI, TPT, TPTPS, MCOPCB5 Previous Names: "sonic hedgehog (Drosophila) homolog", "sonic hedgehog homolog (Drosophila)"
HgncId : HGNC:10848  Omim: 600725 
Refseq: NM_000193 
 
Currently highlighted: Genomic position: chr7:155,604,816 View in genomic position mapping tool
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SHH Gene Structure

Chromosome: chr7
Genbank ID: NM_000193 Orientation: -
Length coding sequence : 1386 nucleotides.
Regionstartendregion lengthphase at end
UTR
155,604,817155,604,967
Exon155,604,517155,604,8163000
Exon155,598,990155,599,2512621
Exon155,595,594155,596,4208270
UTR
155,594,934155,595,593