5A3L
Structure of Cea1A in complex with N-Acetylglucosamine
- PDB DOI: https://doi.org/10.2210/pdb5A3L/pdb
- Classification: CELL ADHESION
- Organism(s): Komagataella pastoris DSMZ 70382
- Expression System: Escherichia coli B
- Mutation(s): No 
- Deposited: 2015-06-02 Released: 2016-06-29 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.202 
- R-Value Work: 0.171 
- R-Value Observed: 0.171 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CEA1 | 240 | Komagataella pastoris DSMZ 70382 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A1A9TAD0 (Komagataella pastoris DSMZ 70382) Explore A0A1A9TAD0  Go to UniProtKB:  A0A1A9TAD0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A1A9TAD0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 7 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NDG Query on NDG | G [auth A], L [auth B], R [auth C], X [auth D] | 2-acetamido-2-deoxy-alpha-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N | |||
NAG Query on NAG | F [auth A], K [auth B], Q [auth C], W [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CIT Query on CIT | M [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
PEG Query on PEG | H [auth A], O [auth B], Z [auth D] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
GOL Query on GOL | N [auth B], S [auth C], Y [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A], J [auth B], P [auth C], V [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NA Query on NA | AA [auth D], BA [auth D], I [auth A], T [auth C], U [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.202 
- R-Value Work: 0.171 
- R-Value Observed: 0.171 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 102.34 | α = 90 |
b = 106.21 | β = 90 |
c = 107.6 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2016-06-29  Deposition Author(s): Kock, M., Brueckner, S., Wozniak, N., Veelders, M., Schlereth, J., Moesch, H.-U., Essen, L.-O.
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2019-03-06
Changes: Data collection, Experimental preparation, Other - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary