6TZX

Crystal Structure of Fungal RNA Kinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.529 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Atomic structures of the RNA end-healing 5'-OH kinase and 2',3'-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.

Banerjee, A.Goldgur, Y.Schwer, B.Shuman, S.

(2019) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
tRNA ligase
A
235Candida albicans (strain SC5314 / ATCC MYA-2876)Mutation(s): 1 
Gene Names: LIG1 (RLG1, TRL1)
EC: 6.5.1.3
Find proteins for P43075 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Go to Gene View: LIG1
Go to UniProtKB:  P43075
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
IDP
Query on IDP

Download SDF File 
Download CCD File 
A
INOSINE-5'-DIPHOSPHATE
C10 H14 N4 O11 P2
JPXZQMKKFWMMGK-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.529 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.174 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 56.650α = 90.00
b = 58.345β = 90.00
c = 72.321γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM42498

Revision History 

  • Version 1.0: 2019-11-06
    Type: Initial release