6WC0

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.61 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.237 
  • R-Value Observed: 0.244 

wwPDB Validation   3D Report Full Report



Literature

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM

Das, A.Li, H.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CRISPR-associated endonuclease, Csn1 familyA983Acidothermus cellulolyticus 11BMutation(s): 0 
Gene Names: Acel_1951
Find proteins for A0LWB3 (Acidothermus cellulolyticus (strain ATCC 43068 / 11B))
Explore A0LWB3 
Go to UniProtKB:  A0LWB3
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsLengthOrganismImage
sgRNA (95-MER)B94Acidothermus cellulolyticus 11B
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(by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsLengthOrganismImage
DNA (30-MER)C30synthetic construct
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 4
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*AP*TP*AP*CP*TP*TP*GP*GP*CP*G)-3')D10synthetic construct
    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 3.61 Å
    • R-Value Free: 0.304 
    • R-Value Work: 0.237 
    • R-Value Observed: 0.244 
    • Space Group: P 21 21 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 81.635α = 90
    b = 111.143β = 90
    c = 177.615γ = 90
    Software Package:
    Software NamePurpose
    PHENIXrefinement
    PDB_EXTRACTdata extraction
    XDSdata reduction
    XDSdata scaling
    PHENIXphasing

    Structure Validation

    View Full Validation Report



    Entry History & Funding Information

    Deposition Data

    • Deposited Date: 2020-03-28 
    • Released Date: 2020-11-18 
    • Deposition Author(s): Li, H., Das, A.

    Funding OrganizationLocationGrant Number
    National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM099604

    Revision History 

    • Version 1.0: 2020-11-18
      Type: Initial release