Macromolecule Content

Total Structure Weight: 94.25 kDa
Atom Count: 5876
Residue Count: 730
Unique protein chains: 2

7BH9

SARS-CoV-2 RBD-62 in complex with ACE2 peptidase domain

DOI: 10.2210/pdb7BH9/pdb
EMDataResource: EMD-12187

Classification: VIRUS
Organism(s): Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2021-01-11 Released: 2021-02-17
Deposition Author(s): Elad, N., Dym, O., Zahradnik, J., Schreiber, G.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Literature

SARS-CoV-2 RBD in vitro evolution follows contagious mutation spread, yet generates an able infection inhibitor

Zahradnk, J., Marciano, S., Shemesh, M., Zoler, E., Chiaravalli, J., Meyer, B., Dym, O., Elad, N., Schreiber, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Angiotensin-converting enzyme 2	A	610	Homo sapiens	Mutation(s): 0 Gene Names: ACE2, UNQ868/PRO1885 EC: 3.4.17.23 (PDB Primary Data), 3.4.17 (PDB Primary Data)
Find proteins for Q9BYF1 (Homo sapiens) Explore Q9BYF1 Go to UniProtKB: Q9BYF1
NIH Common Fund Data Resources
PHAROS: Q9BYF1 GTEx: ENSG00000130234
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Surface glycoprotein	E	202	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 8 Gene Names: S
Find proteins for A0A7D5UBU9 (Severe acute respiratory syndrome coronavirus 2) Explore A0A7D5UBU9 Go to UniProtKB: A0A7D5UBU9
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain D [A] SDF format, chain E [A] SDF format, chain F [A] MOL2 format, chain D [A] MOL2 format, chain E [A] MOL2 format, chain F [A]	A	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Ligand Interaction
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain C [A] MOL2 format, chain C [A]	A	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2021-01-11
Released Date: 2021-02-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	3814/19
Israel Science Foundation	Israel	1268/18

Revision History

Version 1.0: 2021-02-17
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.