Annotations: 1APY

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1apy.1	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	(Glycosyl)asparaginase	Glycosylasparaginase (aspartylglucosaminidase, AGA)	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1apy.2	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	(Glycosyl)asparaginase	Glycosylasparaginase (aspartylglucosaminidase, AGA)	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1apy.1	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	(Glycosyl)asparaginase	Glycosylasparaginase (aspartylglucosaminidase, AGA)	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1apy.2	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	(Glycosyl)asparaginase	Glycosylasparaginase (aspartylglucosaminidase, AGA)	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.60.20.30	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	(Glycosyl)asparaginase	CATH (4.3.0)
D	3.60.20.30	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	(Glycosyl)asparaginase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF01112	Asparaginase (Asparaginase_2)	Asparaginase		Domain
B, D	PF01112	Asparaginase (Asparaginase_2)	Asparaginase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	ASPARTYLGLUCOSAMINIDASE	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity peptidase activity catalytic activity, acting on a protein	macromolecule modification protein deglycosylation carbohydrate derivative metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process glycoprotein metabolic process proteolysis	membrane-bounded organelle intracellular anatomical structure lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen intracellular organelle cellular anatomical structure cytoplasmic vesicle vesicle lysosome membrane-bounded organelle intracellular anatomical structure lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen intracellular organelle cellular anatomical structure cytoplasmic vesicle vesicle lysosome vesicle lumen azurophil granule vacuole intracellular membrane-bounded organelle secretory granule lumen azurophil granule lumen organelle lumen organelle secretory granule primary lysosome secretory vesicle cytoplasm extracellular region extracellular space endoplasmic reticulum
B, D	ASPARTYLGLUCOSAMINIDASE	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity peptidase activity catalytic activity, acting on a protein	macromolecule modification protein deglycosylation carbohydrate derivative metabolic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process glycoprotein metabolic process proteolysis	membrane-bounded organelle intracellular anatomical structure lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen intracellular organelle cellular anatomical structure cytoplasmic vesicle vesicle lysosome membrane-bounded organelle intracellular anatomical structure lytic vacuole intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen vacuolar lumen endomembrane system intracellular organelle lumen intracellular organelle cellular anatomical structure cytoplasmic vesicle vesicle lysosome vesicle lumen azurophil granule vacuole intracellular membrane-bounded organelle secretory granule lumen azurophil granule lumen organelle lumen organelle secretory granule primary lysosome secretory vesicle cytoplasm extracellular region extracellular space endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A, C	IPR000246	Peptidase T2, asparaginase 2	Family
B, D	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
B, D	IPR000246	Peptidase T2, asparaginase 2	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: P20933	aspartylglucosaminuria primitive neuroectodermal tumor schizophrenia adenoma atypical teratoid rhabdoid tumor inborn errors of metabolism lung cancer malignant glioma ovarian cancer Pick disease progressive supranuclear palsy subependymal giant cell astrocytoma Aspartylglucosamidase (AGA) deficiency glioblastoma intellectual disability aspartylglucosaminuria primitive neuroectodermal tumor schizophrenia adenoma atypical teratoid rhabdoid tumor inborn errors of metabolism lung cancer malignant glioma ovarian cancer Pick disease progressive supranuclear palsy subependymal giant cell astrocytoma Aspartylglucosamidase (AGA) deficiency glioblastoma intellectual disability lysosomal storage disease malignant mesothelioma pancreatic ductal adenocarcinoma plasma cell myeloma psoriasis lung adenocarcinoma malignant ependymoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm
B, D	Pharos: P20933	aspartylglucosaminuria primitive neuroectodermal tumor schizophrenia adenoma atypical teratoid rhabdoid tumor inborn errors of metabolism lung cancer malignant glioma ovarian cancer Pick disease progressive supranuclear palsy subependymal giant cell astrocytoma Aspartylglucosamidase (AGA) deficiency glioblastoma intellectual disability aspartylglucosaminuria primitive neuroectodermal tumor schizophrenia adenoma atypical teratoid rhabdoid tumor inborn errors of metabolism lung cancer malignant glioma ovarian cancer Pick disease progressive supranuclear palsy subependymal giant cell astrocytoma Aspartylglucosamidase (AGA) deficiency glioblastoma intellectual disability lysosomal storage disease malignant mesothelioma pancreatic ductal adenocarcinoma plasma cell myeloma psoriasis lung adenocarcinoma malignant ependymoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A, B	N4-(beta-N-acetylglucosaminyl)-L-asparaginase M-CSA #266	Aspartylglucosylaminidase hydrolyses the bonds connecting N-linked oligosaccharides to free (not peptide bonded) asparagine residues. This is an important lysosomal function. Aspartylglucosylaminidase is synthesised as a precursor protein which is activated by proteolytic cleavage between Asp 182 and Thr 183 to generate the required N-terminal threonine residue. The cleavage generates the alpha and beta subunits of the (alpha)2(beta)2 heterotetramer. The cleavage event is thought to be autocatalytic, and many of the residues involved in the normal glucosylaminidase are believed to be involved in the autocatalytic reaction. The Thr 183 side chain, for example, functions as a nucleophile in both [PMID:14616088].	Defined by 6 residues: SER:A-49THR:B-1 [auth B-183]THR:B-19 [auth B-201]ARG:B-29 [auth B-211]THR:B-52 [auth B-234]GLY:B-53 [auth B-235] \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.5.1.26 (PDB Primary Data) Search M-CSA Motif + EC 3.5.1.26

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.