Annotations: 3SEO

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF08247	e3seoA1	A: alpha complex topology	X: VopL dimerization domain (From Topology)	H: VopL dimerization domain (From Topology)	T: VopL dimerization domain	F: EUF08247	ECOD (1.6)
B	EUF08247	e3seoB1	A: alpha complex topology	X: VopL dimerization domain (From Topology)	H: VopL dimerization domain (From Topology)	T: VopL dimerization domain	F: EUF08247	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.1210	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
A	1.10.720.170	Mainly Alpha	Orthogonal Bundle	Transcription Termination Factor Rho, Rna-binding Domain	Chain A, Domain 1	CATH (4.3.0)
B	1.20.120.1210	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)		CATH (4.3.0)
B	1.10.720.170	Mainly Alpha	Orthogonal Bundle	Transcription Termination Factor Rho, Rna-binding Domain	Chain A, Domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20792	VopL C-terminal dimerization domain (VCD)	VopL C-terminal dimerization domain	The VopL C-terminal dimerization domain (VCD) is found in Vibrio parahaemolyticus protein L (VopL), an actin nucleation factor that induces stress fibres when injected into eukaryotic host cells. VCD shows a mainly alpha-helical fold, forms a U-shape ...	The VopL C-terminal dimerization domain (VCD) is found in Vibrio parahaemolyticus protein L (VopL), an actin nucleation factor that induces stress fibres when injected into eukaryotic host cells. VCD shows a mainly alpha-helical fold, forms a U-shaped dimer and interacts with the pointed end of the actin nucleus, contributing to the nucleation activity directly [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	VopL C terminal domain protein	cytoskeletal protein binding actin binding protein binding binding identical protein binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR049414	VopL, C-terminal dimerization domain	Domain
A, B	IPR003124	WH2 domain	Domain
A, B	IPR049415	VopL, C-terminal dimerization domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.