7LX0
Quantitative assessment of chlorophyll types in cryo-EM maps of photosystem I acclimated to far-red light
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
Y [auth A] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
A [auth G] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
M [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
J [auth U] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
HA [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
V [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
IA [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
K [auth V] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
W [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
JA [auth X] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
L [auth W] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
X [auth x] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
B [auth H] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
N [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
Z [auth B] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
AA [auth C] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
C [auth N] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
O [auth c] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
BA [auth D] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
D [auth O] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
P [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
CA [auth E] | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
E [auth P] | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
Q [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
DA [auth F] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
F [auth Q] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
R [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
EA [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8103791 | 3000819 | SCOP2B (2022-06-29) |
G [auth R] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8103791 | 3000819 | SCOP2B (2022-06-29) |
S [auth i] | SCOP2 Family | Subunit VIII of photosystem I reaction centre PsaI | 8103790 | 4002098 | SCOP2 (2022-06-29) |
S [auth i] | SCOP2 Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8103791 | 3000819 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
Y [auth A] | PsaA_PsaB_C | e7lx0A2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
Y [auth A] | PsaA_PsaB_N | e7lx0A1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
A [auth G] | PsaA_PsaB_C | e7lx0G2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A [auth G] | PsaA_PsaB_N | e7lx0G1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
M [auth a] | PsaA_PsaB_C | e7lx0a2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
M [auth a] | PsaA_PsaB_N | e7lx0a1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
J [auth U] | PsaL | e7lx0U1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
HA [auth L] | PsaL | e7lx0L1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
V [auth l] | PsaL | e7lx0l1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
IA [auth M] | PsaM | e7lx0M1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
K [auth V] | PsaM | e7lx0V1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
W [auth m] | PsaM | e7lx0m1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
JA [auth X] | PsaX | e7lx0X1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
L [auth W] | PsaX | e7lx0W1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
X [auth x] | PsaX | e7lx0x1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
B [auth H] | PsaA_PsaB_C | e7lx0H2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
B [auth H] | PsaA_PsaB_N | e7lx0H1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
N [auth b] | PsaA_PsaB_C | e7lx0b2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
N [auth b] | PsaA_PsaB_N | e7lx0b1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
Z [auth B] | PsaA_PsaB_C | e7lx0B2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
Z [auth B] | PsaA_PsaB_N | e7lx0B1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
AA [auth C] | Fer4_21_1 | e7lx0C1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
C [auth N] | Fer4_21_1 | e7lx0N1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
O [auth c] | Fer4_21_1 | e7lx0c1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
BA [auth D] | PsaD | e7lx0D1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
D [auth O] | PsaD | e7lx0O1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
P [auth d] | PsaD | e7lx0d1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
CA [auth E] | PSI_PsaE | e7lx0E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
E [auth P] | PSI_PsaE | e7lx0P1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
Q [auth e] | PSI_PsaE | e7lx0e1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
DA [auth F] | PSI_PsaF | e7lx0F1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
F [auth Q] | PSI_PsaF | e7lx0Q1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
R [auth f] | PSI_PsaF | e7lx0f1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
EA [auth I] | PSI_8 | e7lx0I1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
G [auth R] | PSI_8 | e7lx0R1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
S [auth i] | PSI_8 | e7lx0i1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
FA [auth J] | PSI_PsaJ | e7lx0J1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
H [auth S] | PSI_PsaJ | e7lx0S1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
T [auth j] | PSI_PsaJ | e7lx0j1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G], M [auth a], Y [auth A] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
HA [auth L], J [auth U], V [auth l] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
IA [auth M], K [auth V], W [auth m] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
JA [auth X], L [auth W], X [auth x] | PF08078 | PsaX family (PsaX) | PsaX family | - | Family |
B [auth H], N [auth b], Z [auth B] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
AA [auth C], C [auth N], O [auth c] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
BA [auth D], D [auth O], P [auth d] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
CA [auth E], E [auth P], Q [auth e] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
DA [auth F], F [auth Q], R [auth f] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
FA [auth J], H [auth S], T [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
GA [auth K], I [auth T], U [auth k] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |