8B7Y

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth K]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
H [auth S]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
I [auth T]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
J [auth U]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
L [auth W]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
M [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
O [auth Z]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
Q [auth b]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
R [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
T [auth e]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
X [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
EA [auth D]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
GA [auth F]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
KA [auth P]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
OA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
VA [auth x]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
XA [auth 5]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
K [auth V]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
N [auth Y]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
P [auth a]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
S [auth d]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
V [auth g]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
W [auth h]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
Y [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
BA [auth m]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
IA [auth H]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
JA [auth N]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
LA [auth Q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
NA [auth p]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
PA [auth r]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
QA [auth s]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
RA [auth t]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth K]F_UNCLASSIFIEDe8b7yK2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
C [auth K]F_UNCLASSIFIEDe8b7yK1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
D [auth L]F_UNCLASSIFIEDe8b7yL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
E [auth M]F_UNCLASSIFIEDe8b7yM1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
F [auth O]F_UNCLASSIFIEDe8b7yO2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
G [auth R]F_UNCLASSIFIEDe8b7yR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
H [auth S]F_UNCLASSIFIEDe8b7yS1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
I [auth T]F_UNCLASSIFIEDe8b7yT1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
J [auth U]F_UNCLASSIFIEDe8b7yU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: F_UNCLASSIFIEDECOD (1.6)
L [auth W]F_UNCLASSIFIEDe8b7yW1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
M [auth X]F_UNCLASSIFIEDe8b7yX1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
O [auth Z]F_UNCLASSIFIEDe8b7yZ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: F_UNCLASSIFIEDECOD (1.6)
Q [auth b]F_UNCLASSIFIEDe8b7yb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
R [auth c]F_UNCLASSIFIEDe8b7yc1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
T [auth e]F_UNCLASSIFIEDe8b7ye1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: F_UNCLASSIFIEDECOD (1.6)
X [auth i]F_UNCLASSIFIEDe8b7yi1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
EA [auth D]F_UNCLASSIFIEDe8b7yD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: F_UNCLASSIFIEDECOD (1.6)
GA [auth F]F_UNCLASSIFIEDe8b7yF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: F_UNCLASSIFIEDECOD (1.6)
HA [auth G]F_UNCLASSIFIEDe8b7yG2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
HA [auth G]F_UNCLASSIFIEDe8b7yG1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: F_UNCLASSIFIEDECOD (1.6)
KA [auth P]F_UNCLASSIFIEDe8b7yP2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
KA [auth P]F_UNCLASSIFIEDe8b7yP1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
OA [auth q]F_UNCLASSIFIEDe8b7yq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
UA [auth w]F_UNCLASSIFIEDe8b7yw1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: F_UNCLASSIFIEDECOD (1.6)
VA [auth x]F_UNCLASSIFIEDe8b7yx1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: F_UNCLASSIFIEDECOD (1.6)
WA [auth y]F_UNCLASSIFIEDe8b7yy1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: F_UNCLASSIFIEDECOD (1.6)
XA [auth 5]F_UNCLASSIFIEDe8b7y51 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)
K [auth V]F_UNCLASSIFIEDe8b7yV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: F_UNCLASSIFIEDECOD (1.6)
N [auth Y]F_UNCLASSIFIEDe8b7yY1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: F_UNCLASSIFIEDECOD (1.6)
P [auth a]F_UNCLASSIFIEDe8b7ya1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
S [auth d]F_UNCLASSIFIEDe8b7yd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: F_UNCLASSIFIEDECOD (1.6)
U [auth f]F_UNCLASSIFIEDe8b7yf1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
V [auth g]F_UNCLASSIFIEDe8b7yg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
W [auth h]F_UNCLASSIFIEDe8b7yh1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
Y [auth j]F_UNCLASSIFIEDe8b7yj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
Z [auth k]F_UNCLASSIFIEDe8b7yk1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: F_UNCLASSIFIEDECOD (1.6)
AA [auth l]F_UNCLASSIFIEDe8b7yl1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: F_UNCLASSIFIEDECOD (1.6)
BA [auth m]F_UNCLASSIFIEDe8b7ym1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: F_UNCLASSIFIEDECOD (1.6)
FA [auth E]F_UNCLASSIFIEDe8b7yE2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: F_UNCLASSIFIEDECOD (1.6)
FA [auth E]F_UNCLASSIFIEDe8b7yE1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: F_UNCLASSIFIEDECOD (1.6)
IA [auth H]F_UNCLASSIFIEDe8b7yH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: F_UNCLASSIFIEDECOD (1.6)
JA [auth N]F_UNCLASSIFIEDe8b7yN1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: F_UNCLASSIFIEDECOD (1.6)
LA [auth Q]F_UNCLASSIFIEDe8b7yQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: F_UNCLASSIFIEDECOD (1.6)
MA [auth o]F_UNCLASSIFIEDe8b7yo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: F_UNCLASSIFIEDECOD (1.6)
NA [auth p]F_UNCLASSIFIEDe8b7yp1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
PA [auth r]F_UNCLASSIFIEDe8b7yr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: F_UNCLASSIFIEDECOD (1.6)
QA [auth s]F_UNCLASSIFIEDe8b7ys1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: F_UNCLASSIFIEDECOD (1.6)
RA [auth t]F_UNCLASSIFIEDe8b7yt1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: F_UNCLASSIFIEDECOD (1.6)
SA [auth u]F_UNCLASSIFIEDe8b7yu1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: F_UNCLASSIFIEDECOD (1.6)
TA [auth v]F_UNCLASSIFIEDe8b7yv1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth K]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth K]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
D [auth L]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
E [auth M]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth O]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
G [auth R]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth S]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
I [auth T]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
J [auth U]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
L [auth W]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
M [auth X]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
O [auth Z]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Q [auth b]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth c]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
R [auth c]PF00467KOW motif (KOW)KOW motif- Family
T [auth e]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
X [auth i]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
EA [auth D]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
GA [auth F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
GA [auth F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
HA [auth G]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
HA [auth G]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
KA [auth P]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OA [auth q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
UA [auth w]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
VA [auth x]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
WA [auth y]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
XA [auth 5]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
K [auth V]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
N [auth Y]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
P [auth a]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
S [auth d]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
U [auth f]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
V [auth g]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
W [auth h]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Y [auth j]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
Z [auth k]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AA [auth l]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
BA [auth m]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
FA [auth E]PF07650KH domain (KH_2)KH domain- Domain
FA [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
IA [auth H]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
JA [auth N]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LA [auth Q]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
MA [auth o]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
NA [auth p]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PA [auth r]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
QA [auth s]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
RA [auth t]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
SA [auth u]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
TA [auth v]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I]23S ribosomal RNA---
B [auth J]5S ribosomal RNA---
C [auth K]50S ribosomal protein L2
D [auth L]50S ribosomal protein L3
E [auth M]50S ribosomal protein L4
F [auth O]50S ribosomal protein L6
G [auth R]50S ribosomal protein L13
H [auth S]50S ribosomal protein L14
I [auth T]50S ribosomal protein L15
J [auth U]50S ribosomal protein L16
L [auth W]50S ribosomal protein L18
M [auth X]50S ribosomal protein L19
O [auth Z]50S ribosomal protein L21
Q [auth b]50S ribosomal protein L23
R [auth c]50S ribosomal protein L24
T [auth e]50S ribosomal protein L27
X [auth i]50S ribosomal protein L32
CA [auth n]P-tRNA fMet---
EA [auth D]30S ribosomal protein S2
GA [auth F]30S ribosomal protein S4
HA [auth G]30S ribosomal protein S5
KA [auth P]30S ribosomal protein S8
OA [auth q]30S ribosomal protein S12
UA [auth w]30S ribosomal protein S18
VA [auth x]30S ribosomal protein S19
WA [auth y]30S ribosomal protein S20
XA [auth 5]30S ribosomal protein S21
K [auth V]50S ribosomal protein L17
N [auth Y]50S ribosomal protein L20
P [auth a]50S ribosomal protein L22
S [auth d]50S ribosomal protein L25
U [auth f]50S ribosomal protein L28
V [auth g]50S ribosomal protein L29
W [auth h]50S ribosomal protein L30
Y [auth j]50S ribosomal protein L33
Z [auth k]50S ribosomal protein L34
AA [auth l]50S ribosomal protein L35
BA [auth m]50S ribosomal protein L36
DA [auth C]16S ribosomal RNA---
FA [auth E]30S ribosomal protein S3
IA [auth H]30S ribosomal protein S6
JA [auth N]30S ribosomal protein S7
LA [auth Q]30S ribosomal protein S9
MA [auth o]30S ribosomal protein S10
NA [auth p]30S ribosomal protein S11
PA [auth r]30S ribosomal protein S13
QA [auth s]30S ribosomal protein S14
RA [auth t]30S ribosomal protein S15
SA [auth u]30S ribosomal protein S16
TA [auth v]30S ribosomal protein S17
YA [auth 6]messenger RNA---
ZA [auth z]Myxovalargin B---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth K]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth K]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth K]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth K]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth K]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth K]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth K]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth K]IPR002171Large ribosomal subunit protein uL2Family
D [auth L]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth L]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth L]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth L]IPR000597Large ribosomal subunit protein uL3Family
E [auth M]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth M]IPR002136Large ribosomal subunit protein uL4Family
E [auth M]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth O]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth O]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
F [auth O]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth O]IPR000702Large ribosomal subunit protein uL6-likeFamily
F [auth O]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
G [auth R]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth R]IPR005822Large ribosomal subunit protein uL13Family
G [auth R]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth R]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth S]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
H [auth S]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth S]IPR000218Large ribosomal subunit protein uL14Family
H [auth S]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
I [auth T]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
I [auth T]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth T]IPR030878Large ribosomal subunit protein uL15Family
I [auth T]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth T]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
J [auth U]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth U]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
J [auth U]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
J [auth U]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth U]IPR047873Large ribosomal subunit protein uL16Family
L [auth W]IPR005484Large ribosomal subunit protein uL18Family
L [auth W]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
M [auth X]IPR001857Large ribosomal subunit protein bL19Family
M [auth X]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
M [auth X]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
M [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth Z]IPR028909Large ribosomal subunit protein bL21-likeFamily
O [auth Z]IPR001787Large ribosomal subunit protein bL21Family
O [auth Z]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
O [auth Z]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Q [auth b]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth b]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth b]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Q [auth b]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth c]IPR003256Large ribosomal subunit protein uL24Family
R [auth c]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth c]IPR005824KOWDomain
R [auth c]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth e]IPR001684Large ribosomal subunit protein bL27Family
T [auth e]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
X [auth i]IPR002677Large ribosomal subunit protein bL32Family
X [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth i]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
EA [auth D]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
EA [auth D]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
EA [auth D]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
EA [auth D]IPR001865Small ribosomal subunit protein uS2Family
GA [auth F]IPR002942RNA-binding S4 domainDomain
GA [auth F]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
GA [auth F]IPR022801Small ribosomal subunit protein uS4Family
GA [auth F]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
GA [auth F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
GA [auth F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
HA [auth G]IPR000851Small ribosomal subunit protein uS5Family
HA [auth G]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
HA [auth G]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
HA [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HA [auth G]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
HA [auth G]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
HA [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth P]IPR000630Small ribosomal subunit protein uS8Family
KA [auth P]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
KA [auth P]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
OA [auth q]IPR005679Ribosomal protein uS12, bacterial-typeFamily
OA [auth q]IPR006032Small ribosomal subunit protein uS12Family
OA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth w]IPR001648Small ribosomal subunit protein bS18Family
UA [auth w]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
UA [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
VA [auth x]IPR002222Small ribosomal subunit protein uS19Family
VA [auth x]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
VA [auth x]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
VA [auth x]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
WA [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
WA [auth y]IPR002583Small ribosomal subunit protein bS20Family
XA [auth 5]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
XA [auth 5]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
XA [auth 5]IPR001911Small ribosomal subunit protein bS21Family
K [auth V]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
K [auth V]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
K [auth V]IPR000456Large ribosomal subunit protein bL17Family
N [auth Y]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
N [auth Y]IPR005813Large ribosomal subunit protein bL20Family
P [auth a]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
P [auth a]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth a]IPR001063Large ribosomal subunit protein uL22Family
P [auth a]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
P [auth a]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
S [auth d]IPR020055Ribosomal protein bL25, short-formFamily
S [auth d]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
S [auth d]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
S [auth d]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
U [auth f]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
U [auth f]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
U [auth f]IPR026569Large ribosomal subunit protein bL28Family
U [auth f]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
V [auth g]IPR001854Large ribosomal subunit protein uL29Family
V [auth g]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth g]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth h]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth h]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
W [auth h]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth h]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Y [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth j]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Y [auth j]IPR001705Large ribosomal subunit protein bL33Family
Y [auth j]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Z [auth k]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Z [auth k]IPR000271Large ribosomal subunit protein bL34Family
AA [auth l]IPR021137Large ribosomal subunit protein bL35-likeFamily
AA [auth l]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
AA [auth l]IPR001706Large ribosomal subunit protein bL35Family
AA [auth l]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth m]IPR000473Large ribosomal subunit protein bL36Family
BA [auth m]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
FA [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
FA [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
FA [auth E]IPR004087K Homology domainDomain
FA [auth E]IPR004044K Homology domain, type 2Domain
FA [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
FA [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
FA [auth E]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
FA [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IA [auth H]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IA [auth H]IPR000529Small ribosomal subunit protein bS6Family
IA [auth H]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IA [auth H]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IA [auth H]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
JA [auth N]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
JA [auth N]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
JA [auth N]IPR000235Small ribosomal subunit protein uS7Family
JA [auth N]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
JA [auth N]IPR023798Small ribosomal subunit protein uS7 domainDomain
LA [auth Q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
LA [auth Q]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
LA [auth Q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LA [auth Q]IPR000754Small ribosomal subunit protein uS9Family
LA [auth Q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
MA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
MA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
MA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
MA [auth o]IPR001848Small ribosomal subunit protein uS10Family
NA [auth p]IPR001971Small ribosomal subunit protein uS11Family
NA [auth p]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
NA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
NA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth r]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
PA [auth r]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
PA [auth r]IPR001892Small ribosomal subunit protein uS13Family
PA [auth r]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
PA [auth r]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
QA [auth s]IPR001209Small ribosomal subunit protein uS14Family
QA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
QA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
RA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
RA [auth t]IPR000589Small ribosomal subunit protein uS15Family
RA [auth t]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
SA [auth u]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
SA [auth u]IPR000307Small ribosomal subunit protein bS16Family
SA [auth u]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
TA [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
TA [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
TA [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TA [auth v]IPR000266Small ribosomal subunit protein uS17Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth I]1MG Parent Component: G

A [auth I]2MA Parent Component: A

A [auth I]2MG Parent Component: G

A [auth I]5MC Parent Component: C

A [auth I]5MU Parent Component: U

A [auth I]OMC Parent Component: C

A [auth I]OMG Parent Component: G

A [auth I]OMU Parent Component: U

A [auth I]PSU Parent Component: U

ZA [auth z]AG2
ZA [auth z]ALQ
ZA [auth z]DAL RESIDAA0111 , AA0191

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
ZA [auth z]DAR RESIDAA0111 , AA0191

ZA [auth z]DHV RESIDAA0111 , AA0191

ZA [auth z]DVA RESIDAA0111 , AA0191 , AA0200

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705
ZA [auth z]IB9 Parent Component: TYR

RESIDAA0111 , AA0191 , AA0200

ZA [auth z]MAA Parent Component: ALA

RESIDAA0111 , AA0191 , AA0200 , AA0061

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , D-valine MOD:00705 , N-methyl-L-alanine MOD:00070
ZA [auth z]RX9 Parent Component: ILE

RESIDAA0111 , AA0191 , AA0200 , AA0061

ZA [auth z]RXL Parent Component: VAL

RESIDAA0111 , AA0191 , AA0200 , AA0061