1A1T
STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 6.5 | 298 | |||||
2 | TOCSY | 6.5 | 298 | |||||
3 | TRIPLE-RESONANCE | 6.5 | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX600 | 600 |
2 | GE | DRX800 | 800 |
3 | GE | GE OMEGA PSG 600 | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry | THE COORDINATES FOR THE 25 MODELS WHICH WERE SUBMITTED TO SCIENCE REPRESENT THE BEST-FIT SUPERPOSITION OF THE BACKBONE C, CA AND N ATOMS OF HIV-1 NUCLEOCAPSID PROTEIN (FROM LYS 3 - GLU 51) AND ALL HEAVY ATOMS OF SL3 RNA RECOGNITION ELEMENT (FROM C 4 - G17). THE STRUCTURES WERE GENERATED WITH A TOTAL OF 719 EXPERIMENTAL DISTANCE RESTRAINTS WITH THE USE OF THE PROGRAM DYANA. HYDROGEN BOND RESTRAINTS WERE USED TO IMPROVE CONVERGENCE OF THE STRUCTURES, BUT NOT ALTER THE GLOBAL FOLD. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | LEAST TOTAL PENALTY |
Conformers Calculated Total Number | 800 |
Conformers Submitted Total Number | 25 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | DYANA | GUNTERT,WUTHRICH | |
2 | structure solution | NMRView |