1HZ3
ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10-35)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 300uM A-Beta(10-35); 90% H2O, 10% D2O | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 | |
2 | DQF-COSY | 300uM A-Beta(10-35); 90% H2O, 10% D2O | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 | |
3 | 15N Edited NOESY-HMQC | 300 uM A-Beta(10-35) 2H-Val12, -Leu17, -Val18, -Phe19, -Ile32 and -Leu34; 15N-Phe19, -Val24, -Gly25 and -Gly29; 13C-Val24; 13C-Ala21 Beta Methyl; 13C-Ala30 Beta Methyl; 13C-Met35 Delta Methyl | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 | |
4 | 13C Edited NOESY | 300 uM A-Beta(10-35) 2H-Val12, -Leu17, -Val18, -Phe19, -Ile32 and -Leu34; 15N-Phe19, -Val24, -Gly25 and -Gly29; 13C-Val24; 13C-Ala21 Beta Methyl; 13C-Ala30 Beta Methyl; 13C-Met35 Delta Methyl | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 | |
5 | 15N Edited NOESY-HMQC | 300 uM A-Beta(10-35) 2H-Val12, -Leu17, -Phe19, -Val24, -Ile31 and -Leu34; 15N-Val 18, -Phe20, -Gly25, -Gly29 and -Gly33; 13C-Val24; 13C-Ala21 Beta Methyl; 13C-Ala30 Beta Methyl; 13C-Met35 Delta Methyl | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 | |
6 | 13C Edited NOESY | 300 uM A-Beta(10-35) 2H-Val12, -Leu17, -Phe19, -Val24, -Ile31 and -Leu34; 15N-Val 18, -Phe20, -Gly25, -Gly29 and -Gly33; 13C-Val24; 13C-Ala21 Beta Methyl; 13C-Ala30 Beta Methyl; 13C-Met35 Delta Methyl | 90% H2O/10% D2O | <1mM | 5.6 | ambient | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
2 | Varian | UNITYPLUS | 750 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, and restrained molecular dynamics | The structures are based on a total of 84 sequential, 66 medium- (i to i+2 or i+3) and 32 long-range NOE-derived distance constraints. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 15 |
Representative Model | 1, 9 (fewest violations) |
Additional NMR Experimental Information | |
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Details | Many observed intra-residue NOE-based distance constraints were not included in the structure calculations. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 5.3B | Varian Associates |
2 | structure solution | DGII | Havel, T. | |
3 | refinement | Discover | 3.0 | MSI, Inc. |