1JDQ
Solution Structure of TM006 Protein from Thermotoga maritima
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | hncacb | 2 mM TM006 protein U-15N,13C; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 | |
2 | cbca(co)hn | 2 mM TM006 protein U-15N,13C; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 | |
3 | 15N-hmqc-tocsy | 2 mM TM006 protein U-15N; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 | |
4 | 15N-hmqc-noesy | 2 mM TM006 protein U-15N; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 | |
5 | tocsy | 5 mM TM006 unlabelled protein; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 | |
6 | noesy | 5 mM TM006 unlabelled protein; 50mM phosphate buffer | 90% H2O/10% D2O | 150 mM NaCl | 6.8 | 1 atm | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | After determination of protein fold by using manual NOE assigments, values of coupling constants and 13C chemical shifts, automatic peak NOE assigments were made by using ARIA and the structure refined by using standard protocol in CNS. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 85 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Structure was determined using 2D and 3D experiments for unlabelled, 15N-labelled and double-labelled protein. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.1 | BRUKER |
2 | processing | XwinNMR | 2.1 | BRUKER |
3 | data analysis | XEASY | 1.3.13 | Bartels et al. |
4 | data analysis | ARIA | 14.5.98 | Nilges et al. |
5 | refinement | CNS | 0.9 | Brunger et al. |