1SMH

Protein kinase A variant complex with completely ordered N-terminal helix


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.4278LiCl, MesBisTris, methanol, MEGA-8, (R,R)-2,3-butanediol, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties
Matthews coefficientSolvent content
2.6653.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.78α = 90
b = 79.431β = 90
c = 117.82γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW61.05000MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.04439.797.82975429113
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.0442.191.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.044202817527623148598.040.190760.190760.188180.23789RANDOM28.338
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.29-0.84-1.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.936
r_scangle_it3.537
r_scbond_it2.158
r_mcangle_it1.559
r_angle_refined_deg1.426
r_mcbond_it0.851
r_angle_other_deg0.835
r_symmetry_vdw_other0.257
r_nbd_other0.242
r_symmetry_hbond_refined0.234
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.936
r_scangle_it3.537
r_scbond_it2.158
r_mcangle_it1.559
r_angle_refined_deg1.426
r_mcbond_it0.851
r_angle_other_deg0.835
r_symmetry_vdw_other0.257
r_nbd_other0.242
r_symmetry_hbond_refined0.234
r_nbd_refined0.213
r_symmetry_vdw_refined0.18
r_xyhbond_nbd_refined0.163
r_chiral_restr0.095
r_nbtor_other0.086
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3009
Nucleic Acid Atoms
Solvent Atoms175
Heterogen Atoms46

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement
CCP4data scaling