1YX4
Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.35 mM S5a U-15N, 13C | 20 mM phosphate buffer pH 6.5, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 | |
2 | 3D_15N-separated_NOESY | 0.35 mM S5a U-15N, 13C | 20 mM phosphate buffer pH 6.5, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 283 | |
3 | 3D_13C-separated_NOESY | 0.35 mM S5a U-15N, 13C | 20 mM phosphate buffer pH 6.5, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 | |
4 | 2D NOESY | 0.35 mM S5a U-15N, 13C | 20 mM phosphate buffer pH 6.5, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 | |
5 | 2D NOESY | 0.35 mM S5a U-15N, 13C | 20 mM phosphate buffer pH 6.5, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 283 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 15 |
Conformers Submitted Total Number | 15 |
Representative Model | 10 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | |
2 | data analysis | NMRPipe | ||
3 | refinement | X-PLOR | 3.851 |