1YX6
Solution Structure of S5a UIM-2/Ubiquitin Complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.5 mM S5a U-15N, 2H; 2.0 mM ubiquitin unlabeled | 20 mM Phosphate buffer, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 | |
2 | 4D_13C/15N-separated_NOESY | 0.5 mM S5a U-15N, 2H; 2.0 mM ubiquitin U-13C | 20 mM Phosphate buffer, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 | |
3 | 3D half-filtered 13C-separated NOESY | 0.5 mM S5a U-13C; 2.0 mM ubiquitin unlabeled | 20 mM Phosphate buffer, 100 mM NaCl, 10% D2O | 100 mM NaCl | 6.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 18 |
Representative Model | 9 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | |
2 | data analysis | NMRPipe | ||
3 | refinement | X-PLOR | 3.851 |