2MDC
Solution structure of the WW domain of HYPB
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
2 | 3D HNHA | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
3 | 3D 1H-15N NOESY | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
4 | 3D CBCA(CO)NH | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
5 | 3D HNCACB | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
6 | 3D HCCH-COSY | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
7 | 3D 1H-13C NOESY aliphatic | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
8 | 3D HNCO | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 | |
9 | 3D C(CO)NH | 500 mM [U-99% 13C; U-99% 15N] H2O-1 | 95% H2O/5% D2O | 0.08 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | data analysis | Sparky | Goddard | |
3 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
4 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
5 | collection | TopSpin | Bruker Biospin | |
6 | structure solution | MOLMOL | Koradi, Billeter and Wuthrich | |
7 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
8 | refinement | ARIA |