2MIJ
NMR structure of the S-linked glycopeptide sublancin 168
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 2 mM [U-100% 15N] 15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 2 mM sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
3 | 2D 1H-1H TOCSY | 2 mM sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
4 | 2D DQF-COSY | 2 mM sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
5 | 2D 1H-1H NOESY | 2 mM sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
6 | 3D CBCA(CO)NH | 2 mM [U-98% 13C; U-98% 15N] 13C,15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
7 | 3D HNCA | 2 mM [U-98% 13C; U-98% 15N] 13C,15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
8 | 3D HNHA | 2 mM [U-100% 15N] 15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
9 | 3D 1H-15N NOESY | 2 mM [U-100% 15N] 15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
10 | 3D 1H-15N TOCSY | 2 mM [U-100% 15N] 15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 | ||
11 | 2D 1H-15N HSQC | 2 mM [U-98% 13C; U-98% 15N] 13C,15N-labeled sublancin | 90% H2O/10% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Agilent | VNMRS | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | 2.34 | Schwieters, Kuszewski, Tjandra and Clore |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard |