2KP1
Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 1.0mM [U-13C; U-15N] PDI A'-1, 10mM sodium phosphate-2, 100mM potassium chloride-3, 10mM DTT-4 | 90% H2O/10% D2O | 0.16 | 6 | 1 atm | 310 | |
2 | 3D 1H-15N NOESY | 1.0mM [U-13C; U-15N] PDI A'-1, 10mM sodium phosphate-2, 100mM potassium chloride-3, 10mM DTT-4 | 90% H2O/10% D2O | 0.16 | 6 | 1 atm | 310 | |
3 | 2D 1H-15N HSQC | 1.0mM [U-15N] PDI A'-5, 10mM sodium phosphate-6, 100mM potassium chloride-7, 10mM DTT-8 | 99% D2O | 0.16 | 6 | 1 atm | 310 | |
4 | 2D 1H-1H NOESY | 1.0mM [U-13C; U-15N] PDI A'-1, 10mM sodium phosphate-2, 100mM potassium chloride-3, 10mM DTT-4 | 90% H2O/10% D2O | 0.16 | 6 | 1 atm | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | JEOL | ECA | 920 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges, Read |
2 | chemical shift assignment | CYANA | 2.1 | Guntert, Mumenthaler, Wuthrich |
3 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler, Wuthrich |
4 | collection | XwinNMR | 2.6 | Bruker Biospin |
5 | processing | XwinNMR | 2.6 | Bruker Biospin |
6 | collection | Delta | 4.3.3 | JEOL |
7 | processing | Delta | 4.3.3 | JEOL |
8 | peak picking | Sparky | 3.1 | Goddard |
9 | chemical shift assignment | Sparky | 3.1 | Goddard |