2MDJ
Solution structure of WW domain with polyproline stretch (PP2WW) of HYPB
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
2 | 3D CBCA(CO)NH | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
3 | 3D HNCACB | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
4 | 3D HNCO | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
5 | 3D HNHA | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
6 | 3D C(CO)NH | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
7 | 3D HCCH-COSY | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
8 | 3D 1H-15N NOESY | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 | |
9 | 3D 1H-13C NOESY aliphatic | 500uM [U-99% 13C; U-99% 15N] PP2WW-1, 20mM sodium phosphate-2, 50mM sodium chloride-3, 0.05%(w/v) sodium azide-4 | 95% H2O/5% D2O | 0.08 | 6.5 | ambient atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | data analysis | Sparky | Goddard | |
3 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
5 | structure solution | MOLMOL | Koradi, Billeter and Wuthrich | |
6 | refinement | ARIA |