5IAY
NMR structure of UHRF1 Tandem Tudor Domains in a complex with Spacer peptide
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
2 | 2D 1H-15N HSQC | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
3 | 3D HNCA | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
4 | 3D HNCO | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
5 | 3D HNCACB | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
15 | 3D CBCA(CO)NH | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
14 | 3D HN(CO)CA | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
13 | 3D HCCH-TOCSY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
12 | MQ-CCH-TOCSY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
11 | 3D 1H-13C NOESY aliphatic | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
10 | 3D 1H-13C NOESY aromatic | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
9 | 3D 1H-15N NOESY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
8 | HBCBCGCDHD | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
7 | HBCBCGCDCEHE | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
6 | w2 x-filter TOCSY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
20 | w1,w2 x-filter NOESY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
19 | 13C-filer HSQC-NOESY | 1.0 mM [U-13C; U-15N] TTD, 1.2 mM Spacer | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
18 | 2D 1H-15N HSQC | 1.0 mM [U-15N] Spacer, TTD | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
17 | 3D 1H-15N NOESY | 1.0 mM [U-15N] Spacer, TTD | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 | ||
16 | 3D 1H-15N TOCSY | 1.0 mM [U-15N] Spacer, TTD | 90% H2O/10% D2O | 7.4 | 297.15 | Varian INOVA 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | peak picking | Sparky | Goddard | |
3 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | collection | VNMR | Varian | |
6 | data analysis | TALOS | Cornilescu, Delaglio and Bax |