5T3F

hen egg-white lysozyme soaked with selenourea for 10 min


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP429325% (w/v) PEG3350 and 50mM citrate buffer pH 4.0.
Crystal Properties
Matthews coefficientSolvent content
1.9536.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.37α = 90
b = 77.37β = 90
c = 37.306γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2016-04-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM0.979APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.455099.90.0540.9542.913.720664
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.599.91.30.762.113.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.4533.61907395497.070.135920.133650.18354RANDOM18.683
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.454
r_sphericity_free32.322
r_dihedral_angle_4_deg14.423
r_dihedral_angle_3_deg11.909
r_sphericity_bonded10.746
r_dihedral_angle_1_deg6.05
r_scangle_other4.645
r_long_range_B_refined4.56
r_long_range_B_other4.342
r_scbond_it4.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.454
r_sphericity_free32.322
r_dihedral_angle_4_deg14.423
r_dihedral_angle_3_deg11.909
r_sphericity_bonded10.746
r_dihedral_angle_1_deg6.05
r_scangle_other4.645
r_long_range_B_refined4.56
r_long_range_B_other4.342
r_scbond_it4.006
r_scbond_other4.005
r_mcangle_it2.677
r_mcangle_other2.676
r_mcbond_it2.207
r_mcbond_other2.196
r_rigid_bond_restr1.503
r_angle_refined_deg1.388
r_angle_other_deg1.078
r_chiral_restr0.094
r_gen_planes_refined0.024
r_gen_planes_other0.017
r_bond_refined_d0.011
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms125
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
SHELXDphasing