NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
NAD is a Ligand Of Interest in 2PD3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2PD3_NAD_D_4780 | 61% | 22% | 0.149 | 0.938 | 1.78 | 1.49 | 4 | 7 | 3 | 0 | 100% | 1 |
| 2PD3_NAD_B_2780 | 58% | 23% | 0.158 | 0.936 | 1.78 | 1.4 | 4 | 5 | 4 | 0 | 100% | 1 |
| 2PD3_NAD_A_1780 | 55% | 24% | 0.154 | 0.924 | 1.78 | 1.36 | 3 | 6 | 0 | 0 | 100% | 1 |
| 2PD3_NAD_C_3780 | 47% | 25% | 0.175 | 0.915 | 1.76 | 1.32 | 3 | 4 | 2 | 0 | 100% | 1 |
| 8JFM_NAD_E_301 | 92% | 49% | 0.085 | 0.975 | 0.87 | 1.11 | - | 5 | 0 | 0 | 100% | 1 |
| 8JFN_NAD_A_301 | 84% | 16% | 0.115 | 0.979 | 1.83 | 1.88 | 8 | 6 | 2 | 0 | 100% | 1 |
| 2PD4_NAD_C_3780 | 73% | 23% | 0.125 | 0.952 | 1.81 | 1.38 | 4 | 7 | 3 | 0 | 100% | 1 |
| 3CMC_NAD_R_408 | 100% | 20% | 0.016 | 0.998 | 1.63 | 1.74 | 4 | 9 | 0 | 0 | 100% | 1 |
| 4RQU_NAD_B_403 | 100% | 3% | 0.019 | 0.997 | 3.51 | 2.61 | 13 | 18 | 0 | 0 | 100% | 1 |
| 3EC7_NAD_A_400 | 100% | 18% | 0.025 | 0.995 | 1.8 | 1.74 | 5 | 8 | 1 | 0 | 100% | 1 |
| 4URF_NAD_A_1249 | 100% | 44% | 0.034 | 0.995 | 0.96 | 1.2 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2C5A_NAD_B_1374 | 100% | 23% | 0.039 | 0.992 | 1.34 | 1.84 | 6 | 7 | 1 | 0 | 100% | 1 |
