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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Du, Z."

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Search Summary

This query matches 28 Structures.

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Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (16)
	Mus musculus (2)
	Drosophila melanogaster (1)
	Human immunodeficiency virus 1 (1)
	Mycobacterium tuberculosis (1)
	Mycobacterium tuberculosis H37Rv (1)

Taxonomy

	Eukaryota (19)
	Bacteria (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (17)
	SOLUTION NMR (9)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (21)
	RNA (8)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (5)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (6)
	2005 - 2009 (7)
	2010 - 2014 (6)
	2015 - 2019 (6)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (5)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (10)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (1)
	Artifacts (3)

AllSelected

1 to 25 of 28 Structures

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1GMY	Download File View File

Cathepsin B complexed with dipeptidyl nitrile inhibitor

Greenspan, P.D., Clark, K.L., Tommasi, R.A., Cowen, S.D., McQuire, L.W., Farley, D.L., van Duzer, J.H., Goldberg, R.L., Zhou, H., Du, Z., Fitt, J.J., Coppa, D.E., Fang, Z., Macchia, W., Zhu, L., Capparelli, M.P., Goldstein, R., Wigg, A.M., Doughty, J.R., Bohacek, R.S., Knap, A.K.

(2001) J Med Chem 44: 4524

Released	2002-09-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	AEM, APD, DFA

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1LVJ	Download File View File

STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING

Du, Z., Lind, K.E., James, T.L.

(2002) Chem Biol 9: 707-712

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 Trans Activating Region RNA (nucleic acid)
Unique Ligands	PMZ

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1R7W	Download File View File

NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE

Du, Z., Ulyanov, N.B., Yu, J., James, T.L.

(2004) Biochemistry 43: 5757-5771

Released	2004-05-25
Method	SOLUTION NMR
Macromolecule	34-MER (nucleic acid)

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1R7Z	Download File View File

NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUUCCU BULGE

Du, Z., Ulyanov, N.B., Yu, J., James, T.L.

(2004) Biochemistry 43: 5757-5771

Released	2004-05-25
Method	SOLUTION NMR
Macromolecule	34-MER (nucleic acid)

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1ROQ	Download File View File

Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3

Du, Z., Yu, J., Andino, R., James, T.L.

(2003) Biochemistry 42: 4373-4383

Released	2004-05-18
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPUPAPUPCPAPCPGPGPUPAPCPC)-3' (nucleic acid)

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1TXS	Download File View File

STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA

Du, Z., Yu, J., Ulyanov, N.B., Andino, R., James, T.L.

(2004) Biochemistry 43: 11959-11972

Released	2004-10-05
Method	SOLUTION NMR
Macromolecule	Enteroviral 5'-UTR (nucleic acid)

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2AXY	Download File View File

Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA

Du, Z., Lee, J.K., Tjhen, R.J., Li, S., Stroud, R.M., James, T.L.

(2005) J Biol Chem 280: 38823-38830

Released	2005-09-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Poly(rC)-binding protein 2 (protein) C-rich strand of human telomeric dna (nucleic acid)

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2GM0	Download File View File

Linear dimer of stemloop SL1 from HIV-1

Ulyanov, N.B., Mujeeb, A., Du, Z., Tonelli, M., Parslow, T.G., James, T.L.

(2006) J Biol Chem 281: 16168-16177

Released	2006-04-25
Method	SOLUTION NMR
Macromolecule	RNA (35-MER) (nucleic acid)

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2JZX	Download File View File

PCBP2 KH1-KH2 domains

Du, Z., Fenn, S., Tjhen, R., James, T.

To be published

Released	2008-08-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Poly(rC)-binding protein 2 (protein)

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2L8L	Download File View File

Structure of an engineered splicing intein mutant based on Mycobacterium tuberculosis RecA

Du, Z., Wang, C.

(2011) J Am Chem Soc 133: 10275-10282

Released	2012-01-04
Method	SOLUTION NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	Endonuclease PI-MtuI (protein)

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2P2R	Download File View File

Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA

James, T.L., Stroud, R.M., Du, Z., Fenn, S., Tjhen, R., Lee, J.K.

(2007) Nucleic Acids Res 35: 2651-2660

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Poly(rC)-binding protein 2 (protein) C-rich strand of human telomeric DNA (nucleic acid)
Unique Ligands	CYT

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2PY9	Download File View File

Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2

James, T.L., Du, Z., Lee, J.K.

(2007) RNA 13: 1043-1051

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	Poly(rC)-binding protein 2 (protein) 12-mer C-rich strand of human telomeric RNA (nucleic acid)

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2TPK	Download File View File

AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS

Holland, J.A., Hansen, M.R., Du, Z., Hoffman, D.W.

(1999) RNA 5: 257-271

Released	1998-11-04
Method	SOLUTION NMR
Macromolecule	RNA (MRNA PSEUDOKNOT) (nucleic acid)

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3C4B	Download File View File

Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer

Lee, J.K., Du, Z., Tjhen, R.J., Stroud, R.M., James, T.L.

(2008) Proc Natl Acad Sci U S A 105: 2391-2396

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Mus musculus
Macromolecule	Endoribonuclease Dicer (protein)

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3C4T	Download File View File

Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer

Lee, J.K., Du, Z., Tjhen, R.J., Stroud, R.M., James, T.L.

(2008) Proc Natl Acad Sci U S A 105: 2391-2396

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Endoribonuclease Dicer (protein)
Unique Ligands	CD

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4HM9	Download File View File

Crystal structure of full-length human catenin-beta-like 1

Du, Z., Huang, X., Wang, G., Wu, Y.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1598-1608

Released	2013-07-31
Method	X-RAY DIFFRACTION 3.1001 Å
Organisms	Homo sapiens
Macromolecule	Beta-catenin-like protein 1 (protein)

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4HNM	Download File View File

Crystal structure of human catenin-beta-like 1 56 kDa fragment

Du, Z., Huang, X., Wang, G., Wu, Y.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1598-1608

Released	2013-07-31
Method	X-RAY DIFFRACTION 2.9001 Å
Organisms	Homo sapiens
Macromolecule	Beta-catenin-like protein 1 (protein)

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4L9C	Download File View File

Crystal structure of the FP domain of human F-box protein Fbxo7 (native)

Du, Z., Huang, X., Shang, J., Yang, Y., Wang, G.

(2014) Acta Crystallogr D Biol Crystallogr 70: 155-164

Released	2014-01-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	F-box only protein 7 (protein)
Unique Ligands	GOL

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4L9H	Download File View File

Crystal structure of the FP domain of human F-box protein Fbxo7(SeMet)

Du, Z., Huang, X., Shang, J., Yang, Y., Wang, G.

(2014) Acta Crystallogr D Biol Crystallogr 70: 155-164

Released	2014-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	F-box only protein 7 (protein)

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4NLH	Download File View File

SKICH domain of human TAX1BP1

Yang, Y., Wang, G., Huang, X., Zhu, J., Du, Z.

To be published

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tax1-binding protein 1 (protein)

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4OUH	Download File View File

Crystal structure of the FP domain of Human PI31 Proteasome Inhibitor

Shang, J., Huang, X., Du, Z.

(2015) J Biomol Struct Dyn 33: 1528-1538

Released	2015-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Proteasome inhibitor PI31 subunit (protein)

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4WBE	Download File View File

Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group

Wu, Y., Zhu, J., Huang, X., Du, Z.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Caprin-1 (protein)

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4WBP	Download File View File

Crystal structure of the HR-1 domain of human caprin-1 in the P3121 space group

Wu, Y., Zhu, J., Huang, X., Du, Z.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Caprin-1 (protein)

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5J97	Download File View File

Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)

Wu, Y., Zhu, J., Huang, X., Du, Z.

To be published

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Caprin-2 (protein)

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6BK4	Download File View File

Crystal structure of the HR-1 domain of Drosophila caprin in the P212121 space group

Zhu, J., Wu, Y., Huang, X., Du, Z.

To be published

Released	2018-11-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Caprin homolog (protein)

1 to 25 of 28 Structures

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