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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhu, L."

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Search Summary

This query matches 137 Structures.

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Structure Determination Methodology

experimental (137)

Scientific Name of Source Organism

	Homo sapiens (60)
	Mus musculus (11)
	Severe acute respiratory syndrome-related coronavirus (11)
	Escherichia coli (8)
	Echovirus E30 (7)
	Rattus norvegicus (7)
	Bos taurus (6)
	Clostridium pasteurianum (4)
	Human hepatitis A virus Hu/Australia/HM175/1976 (4)
	Parengyodontium album (4)

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Taxonomy

	Eukaryota (79)
	Riboviria (43)
	Bacteria (25)
	Archaea (4)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (73)
	ELECTRON MICROSCOPY (35)
	SOLUTION NMR (27)
	ELECTRON CRYSTALLOGRAPHY (2)

Polymer Entity Type

	Protein (130)
	DNA (7)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (16)
	2.0 - 2.5 (23)
	2.5 - 3.0 (29)
	3.0 - 3.5 (24)
	3.5 - 4.0 (12)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (3)
	2005 - 2009 (5)
	2010 - 2014 (29)
	2015 - 2019 (47)
	2020 - 2024 (45)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (35)
	Oxidoreductases (17)
	Transferases (8)

Membrane Protein Annotation

	PDBTM (18)
	MemProtMD (15)
	mpstruc (15)
	OPM (10)

Symmetry Type

	Asymmetric (81)
	Cyclic (25)
	Icosahedral (25)
	Dihedral (1)

SCOP Classification

	All beta proteins (29)
	Alpha and beta proteins (a/b) (19)
	All alpha proteins (11)
	Artifacts (7)
	Alpha and beta proteins (a+b) (7)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 137 Structures

Page 1 of 6

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103D	Download File View File

THE UNUSUAL STRUCTURE OF THE HUMAN CENTROMERE (GGA)2 MOTIF: UNPAIRED GUANOSINE RESIDUES STACKED BETWEEN SHEARED G(DOT)A PAIRS

Chou, S.-H., Zhu, L., Reid, B.R.

(1994) J Mol Biol 244: 259-268

Released	1995-03-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPTPGPGPAPAPTPGPGPAPAPC)-3') (nucleic acid)

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104D	Download File View File

DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN

Zhu, L., Salazar, M., Reid, B.R.

(1995) Biochemistry 34: 2372-2380

Released	1995-03-31
Method	SOLUTION NMR
Macromolecule	DNA/RNA (5'-R(CPGPCPG)-D(PTPAPTPAPCPGPCPG)-3') (hybrid)

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169D	Download File View File

THE SOLUTION STRUCTURE OF THE R(GCG)D(TATACCC):D(GGGTATACGC) OKAZAKI FRAGMENT CONTAINS TWO DISTINCT DUPLEX MORPHOLOGIES CONNECTED BY A JUNCTION

Salazar, M., Fedoroff, O.Y., Zhu, L., Reid, B.R.

(1994) J Mol Biol 241: 440-455

Released	1994-07-31
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPGPGPTPAPTPAPCPGPC)-3') (nucleic acid) DNA/RNA (5'-R(GPCPG)-D(PTPAPTPAPCPCPC)-3') (hybrid)

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1BJH	Download File View File

HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES

Chou, S.-H., Zhu, L., Gao, Z., Cheng, J.-W., Reid, B.R.

(1996) J Mol Biol 264: 981

Released	1997-12-03
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPTPAPCPAPAPAPGPTPAP*C)-3') (nucleic acid)

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1DDP	Download File View File

Solution structure of a CISPLATIN-INDUCED [CATAGCTATG]2 Interstrand cross-link

Zhu, L., Huang, H., Reid, B.R., Drobny, G.P., Hopkins, P.B.

(1995) Science 270: 1842-1845

Released	1996-03-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPTPAPGPCPTPAPTPG)-3') (nucleic acid)
Unique Ligands	CPT

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1GMY	Download File View File

Cathepsin B complexed with dipeptidyl nitrile inhibitor

Greenspan, P.D., Clark, K.L., Tommasi, R.A., Cowen, S.D., McQuire, L.W., Farley, D.L., van Duzer, J.H., Goldberg, R.L., Zhou, H., Du, Z., Fitt, J.J., Coppa, D.E., Fang, Z., Macchia, W., Zhu, L., Capparelli, M.P., Goldstein, R., Wigg, A.M., Doughty, J.R., Bohacek, R.S., Knap, A.K.

(2001) J Med Chem 44: 4524

Released	2002-09-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	AEM, APD, DFA

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1HOV	Download File View File

SOLUTION STRUCTURE OF A CATALYTIC DOMAIN OF MMP-2 COMPLEXED WITH SC-74020

Feng, Y., Likos, J.J., Zhu, L., Woodward, H., Munie, G., McDonald, J.J., Stevens, A.M., Howard, C.P., De Crescenzo, G.A., Welsch, D., Shieh, H.-S., Stallings, W.C.

(2002) Biochim Biophys Acta 1598: 10-23

Released	2001-12-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MATRIX METALLOPROTEINASE-2 (protein)
Unique Ligands	CA, I52, ZN

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1LPV	Download File View File

DROSOPHILA MELANOGASTER DOUBLESEX (DSX), NMR, 18 STRUCTURES

Zhu, L., Wilken, J., Phillips, N., Narendra, U., Chan, G., Stratton, S., Kent, S., Weiss, M.A.

(2000) Genes Dev 14: 1750-1764

Released	2002-10-02
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Doublesex protein (protein)
Unique Ligands	ZN

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1XUE	Download File View File

STRUCTURE OF GTGGAATGCAATGGAAC HAIRPIN, NMR, 10 STRUCTURES

Zhu, L., Chou, S.-H., Reid, B.R.

(1996) Proc Natl Acad Sci U S A 93: 12159-12164

Released	1997-03-12
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(GPTPGPGPAPAPTPGPCPAPAPTPGPGPAPAP*C)-3') (nucleic acid)

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1ZHU	Download File View File

DNA (5'-D(CPAPAPTPGPCPAPAPTPG)-3'), NMR, 10 STRUCTURES

Zhu, L., Chou, S.-H., Xu, J., Reid, B.R.

(1995) Nat Struct Biol 2: 1012-1017

Released	1996-07-11
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPAPTPGPCPAPAPTPG)-3') (nucleic acid)

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2I2Z	Download File View File

Human serum albumin complexed with myristate and aspirin

Yang, F., Bian, C., Zhu, L., Zhao, G., Huang, Z., Huang, M.

(2007) J Struct Biol 157: 348-355

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	MYR, SAL

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2I30	Download File View File

Human serum albumin complexed with myristate and salicylic acid

Yang, F., Bian, C., Zhu, L., Zhao, G., Huang, Z., Huang, M.

(2007) J Struct Biol 157: 348-355

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	MYR, SAL

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2MIJ	Download File View File

NMR structure of the S-linked glycopeptide sublancin 168

Garcia De Gonzalo, C.V., Zhu, L., Oman, T.J., van der Donk, W.A.

(2014) ACS Chem Biol 9: 796-801

Released	2014-03-12
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	SPBc2 prophage-derived bacteriocin sublancin-168 (protein)
Unique Ligands	BGC

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2MW3	Download File View File

Solution NMR structure of the lasso peptide streptomonomicin

Tietz, J.I., Zhu, L., Mitchell, D.A., Metelev, M., Melby, J.O., Blair, P.M., Livnat, I., Severinov, K.

(2015) Chem Biol 22: 241-250

Released	2015-01-28
Method	SOLUTION NMR
Organisms	Streptomonospora alba
Macromolecule	Lasso peptide (protein)

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2MWN	Download File View File

Talin-F3 / RIAM N-terminal Peptide complex

Yang, J., Zhu, L., Zhang, H., Hirbawi, J., Fukuda, K., Dwivedi, P., Liu, J., Byzova, T., Plow, E.F., Wu, J., Qin, J.

(2014) Nat Commun 5: 5880-5880

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 precursor protein-binding family B member 1-interacting protein (protein) Talin-1 (protein)

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2OEH	Download File View File

Determination of the Three-dimensional Structure of the Mrf2-DNA Complex Using Paramagnetic Spin Labeling

Cai, S., Zhu, L., Zhang, Z.

(2007) Biochemistry 46: 4943-4950

Released	2007-08-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	AT-rich interactive domain-containing protein 5B (protein) 5'-D(PCPGPAPCPGPTPTPAPTPAPTPTPGPT)-3' (nucleic acid) 5'-D(PTPAPCPAPAPTPAPTPAPAPCPGPTPCP*G)-3' (nucleic acid)

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3B9L	Download File View File

Human serum albumin complexed with myristate and AZT

Zhu, L., Yang, F., Chen, L., Meehan, E.J., Huang, M.

(2008) J Struct Biol 162: 40-49

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	AZZ, MYR

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3B9M	Download File View File

Human serum albumin complexed with myristate, 3'-azido-3'-deoxythymidine (AZT) and salicylic acid

Zhu, L., Yang, F., Chen, L., Meehan, E.J., Huang, M.

(2008) J Struct Biol 162: 40-49

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	AZZ, MYR, SAL

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3JB4	Download File View File

Structure of Ljungan virus: insight into picornavirus packaging

Zhu, L., Wang, X.X., Ren, J.S., Porta, C., Wenham, H., Ekstrom, J.-O., Panjwani, A., Knowles, N.J., Kotecha, A., Siebert, A., Lindberg, M., Fry, E.E., Rao, Z.H., Tuthill, T.J., Stuart, D.I.

(2015) Nat Commun 6: 8316-8316

Released	2015-10-21
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Ljungan virus 87-012
Macromolecule	VP0 (protein) VP1 (protein) VP3 (protein)

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3RU0	Download File View File

Cocrystal structure of human SMYD3 with inhibitor Sinefungin bound

Foreman, K.W., Brown, M., Park, F., Emtage, S., Harriss, J., Das, C., Zhu, L., Crew, A., Arnold, L., Shaaban, S., Tucker, P.

(2011) PLoS One 6: e22290-e22290

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.849 Å
Organisms	Homo sapiens
Macromolecule	SET and MYND domain-containing protein 3 (protein)
Unique Ligands	SFG, ZN

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3SN8	Download File View File

Crystal structure of SARS coronavirus main protease complexed with Cm-FF-H (soaking)

Zhu, L., Hilgenfeld, R.

(2011) Antiviral Res 92: 204-212

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	S89

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3SNA	Download File View File

Crystal structure of SARS coronavirus main protease complexed with Ac-NSFSQ-H (soaking)

Zhu, L., Hilgenfeld, R.

(2011) Antiviral Res 92: 204-212

Released	2011-09-07
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein) Peptide aldehyde inhibitor Ac-NSFSQ-H (protein)

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3SNB	Download File View File

Crystal structure of SARS coronavirus main protease complexed with Ac-DSFDQ-H (soaking)

Zhu, L., Hilgenfeld, R.

(2011) Antiviral Res 92: 204-212

Released	2011-09-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein) Peptide aldehyde inhibitor Ac-DSFDQ-H (protein)

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3SNC	Download File View File

Crystal structure of SARS coronavirus main protease complexed with Ac-NSTSQ-H (soaking)

Zhu, L., Hilgenfeld, R.

(2011) Antiviral Res 92: 204-212

Released	2011-09-07
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein) Peptide aldehyde inhibitor Ac-NSTSQ-H (protein)
Unique Ligands	DMS

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3SND	Download File View File

Crystal structure of SARS coronavirus main protease complexed with Ac-ESTLQ-H (cocrystallization)

Zhu, L., Hilgenfeld, R.

(2011) Antiviral Res 92: 204-212

Released	2011-09-07
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein) Peptide aldehyde inhibitor Ac-ESTLQ-H (protein)
Unique Ligands	MRD

1 to 25 of 137 Structures

Page 1 of 6

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