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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Bean pod mottle virus"

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This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	synthetic construct (3)
	Eggerthella sp. YY7918 (1)
	Geobacillus stearothermophilus (1)
	Homo sapiens (1)

Taxonomy

	other sequences (3)
	Bacteria (2)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (3)

Polymer Entity Type

	DNA (3)
	Protein (3)

Refinement Resolution (Å)

1.5 - 2.0 (3)

Release Date

	2020 - 2024 (2)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

Asymmetric (3)

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8FAY	Download File View File

Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

Trasvina-Arenas, C.H., Lin, W.J., Demir, M., Fisher, A.J., David, S.S., Horvath, M.P.

To be published

Released	2024-05-29
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Adenine DNA glycosylase (protein) DNA (5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(PGPTPCPCPAP(NR1)PGPTPCP*T)-3') (nucleic acid)
Unique Ligands	SF4, SO4

Explore in 3D

8UUC	Download File View File

Crystal structure of a bacterial clusterless MutYX bound to an Abasic site analog (THF) opposite d(8-oxo-G)

Trasvina-Arenas, C.H., David, S.S., Fisher, A.J.

(2025) bioRxiv

Released	2025-01-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Eggerthella sp. YY7918 synthetic construct
Macromolecule	Adenine DNA glycosylase (protein) DNA (5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPCPCPAP(3DR)PGPTPCPT)-3') (nucleic acid)
Unique Ligands	CL, EDO, MG, NA, PO4

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9BS2	Download File View File

Glycosylase MutY variant R149Q in complex with DNA containing d(8-oxo-G) paired with a product analog (THF) to 1.51 A resolution

Trasvina-Arenas, C.H., Tamayo, N., Lin, W.J., Demir, M., Fisher, A.J., David, S.S., Horvath, M.P.

To be published

Released	2024-10-30
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	Adenine DNA glycosylase (protein) DNA (5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPCPCPAP(3DR)PGPTPCPT)-3') (nucleic acid)
Unique Ligands	ACY, CA, SF4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

8FAY

Human MUTYH adenine glycosylase bound to DNA containing a transition state analog (1N) paired with d(8-oxo-G)

8UUC

Crystal structure of a bacterial clusterless MutYX bound to an Abasic site analog (THF) opposite d(8-oxo-G)

9BS2

Glycosylase MutY variant R149Q in complex with DNA containing d(8-oxo-G) paired with a product analog (THF) to 1.51 A resolution