Crystal Structure of a Broadly Neutralizing Anti-HIV-1 Antibody in Complex with a Peptide Mimotope
Saphire, E.O., Montero, M., Menendez, A., Irving, M.B., Zwick, M.B., Parren, P.W.H.I., Burton, D.R., Scott, J.K., Wilson, I.A.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
IMMUNOGLOBULIN LIGHT CHAIN | A [auth L], C [auth M] | 215 | Homo sapiens | Mutation(s): 0 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01834 (Homo sapiens) Explore P01834 Go to UniProtKB: P01834 | |||||
PHAROS: P01834 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01834 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
IMMUNOGLOBULIN HEAVY CHAIN | B [auth H], D [auth K] | 230 | Homo sapiens | Mutation(s): 0 | ![]() |
UniProt | |||||
Find proteins for P0DOX5 (Homo sapiens) Explore P0DOX5 Go to UniProtKB: P0DOX5 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DOX5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
B2.1 peptide | E [auth P], F [auth R] | 21 | synthetic construct | Mutation(s): 0 | ![]() |
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CXS Query on CXS | I [auth H] | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID C9 H19 N O3 S PJWWRFATQTVXHA-UHFFFAOYSA-N | |||
SO4 Query on SO4 | H, N [auth K], S [auth R], T [auth R] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | G [auth L] J [auth H] K [auth H] L [auth M] M | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
K Query on K | R [auth P] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
ORN Query on ORN | E [auth P], F [auth R] | L-PEPTIDE LINKING | C5 H12 N2 O2 | ALA |
Length ( Å ) | Angle ( ˚ ) |
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a = 51.621 | α = 90 |
b = 184.358 | β = 103.05 |
c = 56.173 | γ = 90 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
CNS | refinement |