2FHT

Crystal Structure of Viral Macrophage Inflammatory Protein-II

• PDB DOI: https://doi.org/10.2210/pdb2FHT/pdb

• Classification: CHEMOKINE
• Organism(s): Human herpesvirus 8 type P (isolate GK18)
• Mutation(s): No 


• Deposited: 2005-12-27 Released: 2006-12-26 
• Deposition Author(s): Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.331 (Depositor) 
• R-Value Work: 
  0.239 (Depositor), 0.270 (DCC) 
• R-Value Observed: 
  0.242 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of chemically synthesized vMIP-II.

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C., An, J., Wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

• PubMed: 17243149 
• DOI: https://doi.org/10.1002/prot.21172
• Primary Citation of Related Structures:  
  2FHT, 2FJ2

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Organizational Affiliation: 

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.14 kDa 
• Atom Count: 558 
• Modelled Residue Count: 68 
• Deposited Residue Count: 71 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Viral macrophage inflammatory protein-II	A	71	N/A	Mutation(s): 0
UniProt
Find proteins for Q98157 (Human herpesvirus 8 type P (isolate GK18)) Explore Q98157  Go to UniProtKB:  Q98157

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.331 (Depositor) 
• R-Value Work:  0.239 (Depositor), 0.270 (DCC) 
• R-Value Observed: 0.242 (Depositor) 

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.75	α = 90
b = 45.75	β = 90
c = 66.36	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	refinement
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
DENZO	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-12-26 
Deposition Author(s): Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

Revision History  

• Version 1.0: 2006-12-26
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2019-07-24
  Changes: Data collection, Refinement description
• Version 1.5: 2023-08-30
  Changes: Data collection, Database references, Refinement description
• Version 1.6: 2024-11-20
  Changes: Structure summary