3OK4

Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects

PDB DOI: https://doi.org/10.2210/pdb3OK4/pdb
NAKB: 3OK4

Classification: RNA
Mutation(s): No

Deposited: 2010-08-24 Released: 2011-11-30
Deposition Author(s): Ovaere, M., Van Meervelt, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free:
0.253 (Depositor), 0.250 (DCC)
R-Value Work:
0.221 (Depositor), 0.220 (DCC)
R-Value Observed:
0.223 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of the ANA:RNA decamer suffering from lattice translocation defects

Ovaere, M., Van Meervelt, L.

To be published.

Macromolecule Content

Total Structure Weight: 98.57 kDa
Atom Count: 6,885
Modelled Residue Count: 315
Deposited Residue Count: 315
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
ANA	A AA [auth 3] B [auth C] C [auth E] G A, AA [auth 3], B [auth C], C [auth E], G, H [auth I], I [auth K], M, N [auth O], O [auth Q], S, T [auth U], U [auth W], Y, Z [auth 1]	11	N/A
Sequence Annotations Expand
Reference Sequence LOADING

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA	BA [auth Z] CA [auth 2] D [auth B] DA [auth 4] E [auth D] BA [auth Z], CA [auth 2], D [auth B], DA [auth 4], E [auth D], F, J [auth H], K [auth J], L, P [auth N], Q [auth P], R, V [auth T], W [auth V], X	10	N/A
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.253 (Depositor), 0.250 (DCC)
R-Value Work: 0.221 (Depositor), 0.220 (DCC)
R-Value Observed: 0.223 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.22	α = 90
b = 34.21	β = 90
c = 170.92	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SHELX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-11-30

Deposition Author(s):

Van Meervelt, L.

Revision History (Full details and data files)

Version 1.0: 2011-11-30
Type: Initial release
Version 1.1: 2018-12-12
Changes: Advisory, Data collection, Derived calculations
Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.