6IUS

A higher kcat Rubisco

PDB DOI: https://doi.org/10.2210/pdb6IUS/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): endosymbiont of Riftia pachyptila
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-30 Released: 2019-12-04
Deposition Author(s): Li, Y., Cai, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free:
0.231 (Depositor), 0.240 (DCC)
R-Value Work:
0.192 (Depositor), 0.200 (DCC)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

A higher kcat Rubisco

Li, Y., Cai, Z.

To be published.

Macromolecule Content

Total Structure Weight: 151.98 kDa
Atom Count: 10,515
Modelled Residue Count: 1,267
Deposited Residue Count: 1,383
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribulose-1,5-bisphosphate carboxylase/oxygenase	A, B, C	461	endosymbiont of Riftia pachyptila	Mutation(s): 0 Gene Names: cbbM EC: 4.1.1.39
UniProt
Find proteins for O68486 (endosymbiont of Riftia pachyptila) Explore O68486 Go to UniProtKB: O68486
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O68486
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free: 0.231 (Depositor), 0.240 (DCC)
R-Value Work: 0.192 (Depositor), 0.200 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 166.501	α = 90
b = 107.842	β = 130.04
c = 112.306	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-12-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-12-04
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.