7CAG
Mycobacterium smegmatis LpqY-SugABC complex in the catalytic intermediate state
- PDB DOI: https://doi.org/10.2210/pdb7CAG/pdb
- EM Map EMD-30330: EMDB EMDataResource
- Classification: TRANSPORT PROTEIN
- Organism(s): Mycolicibacterium smegmatis MC2 155
- Expression System: Mycolicibacterium smegmatis MC2 155
- Mutation(s): Yes 
- Membrane Protein: Yes  OPMPDBTMMemProtMD
- Deposited: 2020-06-08 Released: 2020-12-02 
- Funding Organization(s): Ministry of Science and Technology (MoST, China), National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.78 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Bacterial extracellular solute-binding protein | A [auth E] | 465 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: MSMEG_5061 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A0R2C3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0R2C3  Go to UniProtKB:  A0R2C3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0R2C3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ABC sugar transporter, permease component | B [auth A] | 305 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: sugA, MSMEI_4933 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A0R2C2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0R2C2  Go to UniProtKB:  A0R2C2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0R2C2 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ABC transporter, permease protein SugB | C [auth B] | 278 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0  Gene Names: MSMEG_5059 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A0R2C1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0R2C1  Go to UniProtKB:  A0R2C1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0R2C1 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ABC transporter, ATP-binding protein SugC | D [auth C], E [auth D] | 406 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 1  Gene Names: MSMEG_5058 | |
UniProt | |||||
Find proteins for A0R2C0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0R2C0  Go to UniProtKB:  A0R2C0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0R2C0 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ATP Query on ATP | H [auth C], J [auth D] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
MG Query on MG | G [auth C], I [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 5 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900006 Query on PRD_900006 | F [auth H] | trehalose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.78 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Entry History & Funding Information
Deposition Data
- Released Date: 2020-12-02  Deposition Author(s): Liu, F., Liang, J., Zhang, B., Gao, Y., Yang, X., Hu, T.
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Science and Technology (MoST, China) | China | 2017YFC0840300 |
National Natural Science Foundation of China (NSFC) | China | 81520108019 |
Revision History (Full details and data files)
- Version 1.0: 2020-12-02
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references