7CAG

Mycobacterium smegmatis LpqY-SugABC complex in the catalytic intermediate state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bacterial extracellular solute-binding proteinA [auth E]465Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_5061
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C3 
Go to UniProtKB:  A0R2C3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R2C3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ABC sugar transporter, permease componentB [auth A]305Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: sugAMSMEI_4933
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C2 
Go to UniProtKB:  A0R2C2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R2C2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, permease protein SugBC [auth B]278Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_5059
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C1 
Go to UniProtKB:  A0R2C1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R2C1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, ATP-binding protein SugCD [auth C],
E [auth D]
406Mycolicibacterium smegmatis MC2 155Mutation(s): 1 
Gene Names: MSMEG_5058
UniProt
Find proteins for A0R2C0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C0 
Go to UniProtKB:  A0R2C0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R2C0
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranoseF [auth H]2N/A
Glycosylation Resources
GlyTouCan:  G92130SN
GlyCosmos:  G92130SN
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2017YFC0840300
National Natural Science Foundation of China (NSFC)China81520108019

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references