8DKM

Cryo-EM structure of cystine-bound cystinosin in a lumen-open state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure and Mechanism of Human Cystine Exporter Cystinosin

Guo, X.Schmiege, P.Assafa, T.E.Millhauser, G.Feng, L.Li, X.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Fab 3H5 Heavy ChainA250Mus musculusMutation(s): 0 
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Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Fab 3H5 Kappa chainB233Mus musculusMutation(s): 0 
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Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Isoform 2 of CystinosinC [auth P]408Homo sapiensMutation(s): 1 
Gene Names: CTNS
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O60931 (Homo sapiens)
Explore O60931 
Go to UniProtKB:  O60931
PHAROS:  O60931
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60931
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IYY (Subject of Investigation/LOI)
Query on IYY

Download Ideal Coordinates CCD File 
D [auth P]L-cystine
C6 H12 N2 O4 S2
LEVWYRKDKASIDU-IMJSIDKUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--
Welch FoundationUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-21
    Type: Initial release