Structural Basis for Base Engagement and Stereochemistry Revealed by Alteration of Catalytic Residue Glu43 in DNA Repair Glycosylase MutY
Russelburg, L.P., Demir, M., Cedeno, K., David, S.S., Horvath, M.P.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Adenine DNA glycosylase | 365 | Geobacillus stearothermophilus | Mutation(s): 1 EC: 3.2.2.31 | ![]() | |
UniProt | |||||
Find proteins for P83847 (Geobacillus stearothermophilus) Explore P83847 Go to UniProtKB: P83847 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P83847 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 (Subject of Investigation/LOI) Query on SF4 | D [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CA Query on CA | F [auth A], G [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 37.74 | α = 90 |
b = 85.92 | β = 90 |
c = 140.69 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, United States) | United States | 1905304 |
National Science Foundation (NSF, United States) | United States | 1905249 |
National Science Foundation (NSF, United States) | United States | 1610721 |
National Science Foundation (NSF, United States) | United States | 1608934 |