Role of N-glycosylation at asparagine 153 of dengue envelope protein in immune response
Fibriansah, G., Ng, T.S., Lim, X.N., Tan, A.W.K., Shi, J., Crowe, J.E., Lok, S.M.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Envelope protein | 495 | dengue virus type 2 | Mutation(s): 0  Gene Names: E | ![]() | |
UniProt | |||||
Find proteins for A0A678XB23 (dengue virus type 2) Explore A0A678XB23  Go to UniProtKB:  A0A678XB23 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A678XB23 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Membrane polyprotein | 75 | dengue virus type 2 | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for A4GVG9 (dengue virus type 2) Explore A4GVG9  Go to UniProtKB:  A4GVG9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A4GVG9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Human antibody C10 Fab (heavy chain) | G, I [auth K] | 127 | Homo sapiens | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Human antibody C10 Fab (light chain) | H, J [auth L] | 111 | Homo sapiens | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | K [auth A], L [auth C], M [auth C], N [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION |
Funding Organization | Location | Grant Number |
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Other government | Singapore | MOH-OFIRG18may-0007 |