9B3X

Rat TRPV2 E724A/D725A bound to 2-APB

PDB DOI: https://doi.org/10.2210/pdb9B3X/pdb
EM Map EMD-44159: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Rattus norvegicus
Expression System: Saccharomyces cerevisiae
Mutation(s): Yes

Deposited: 2024-03-20 Released: 2025-02-26
Deposition Author(s): Pumroy, R.A., Rocereta, J.A., Moiseenkova-Bell, V.Y.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insights into TRPV2 modulation by probenecid

Rocereta, J.A., Sturhahn, T., Pumroy, R.A., Fricke, T.C., Herzog, C., Leffler, A., Moiseenkova-Bell, V.Y.

To be published.

Macromolecule Content

Total Structure Weight: 349.78 kDa
Atom Count: 19,988
Modelled Residue Count: 2,476
Deposited Residue Count: 3,044
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transient receptor potential cation channel subfamily V member 2	A, B, C, D	761	Rattus norvegicus	Mutation(s): 2 Gene Names: Trpv2, Sac2b, Vrl1
UniProt
Find proteins for Q9WUD2 (Rattus norvegicus) Explore Q9WUD2 Go to UniProtKB: Q9WUD2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9WUD2
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEX Query on PEX Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain I [auth C] SDF format, chain K [auth D] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain I [auth C] MOL2 format, chain K [auth D] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B] mmCIF format, chain I [auth C] mmCIF format, chain K [auth D]	E [auth A], G [auth B], I [auth C], K [auth D]	1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE C₂₅ H₄₉ N O₈ P KKOSJVWUOHEQKA-HSZRJFAPSA-M		Interactions Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain K [auth D] Interactions & Density Focus chain E [auth A] Focus chain G [auth B] Focus chain I [auth C] Focus chain K [auth D]
FZ4 (Subject of Investigation/LOI) Query on FZ4 Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth B] SDF format, chain J [auth C] SDF format, chain L [auth D] MOL2 format, chain F [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain L [auth D] mmCIF format, chain F [auth A] mmCIF format, chain H [auth B] mmCIF format, chain J [auth C] mmCIF format, chain L [auth D]	F [auth A], H [auth B], J [auth C], L [auth D]	2-aminoethyl diphenylborinate C₁₄ H₁₆ B N O BLZVCIGGICSWIG-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D] Interactions & Density Focus chain F [auth A] Focus chain H [auth B] Focus chain J [auth C] Focus chain L [auth D]