9EGQ | pdb_00009egq

Human BEST1 bound to GABA in an intermediate state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.62 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The pentameric chloride channel BEST1 is activated by extracellular GABA.

Pant, S.Tam, S.W.Long, S.B.

(2025) Proc Natl Acad Sci U S A 122: e2424474122-e2424474122

  • DOI: https://doi.org/10.1073/pnas.2424474122
  • Primary Citation of Related Structures:  
    9EFZ, 9EGM, 9EGQ, 9EGS, 9EGT

  • PubMed Abstract: 

    Bestrophin-1 (BEST1) is a chloride channel expressed in the eye and other tissues of the body. A link between BEST1 and the principal inhibitory neurotransmitter γ -aminobutyric acid (GABA) has been proposed. The most appreciated receptors for extracellular GABA are the GABA B G-protein-coupled receptors and the pentameric GABA A chloride channels, both of which have fundamental roles in the central nervous system. Here, we demonstrate that BEST1 is directly activated by GABA. Through functional studies and atomic-resolution structures of human and chicken BEST1, we identify a GABA binding site on the channel's extracellular side and determine the mechanism by which GABA binding stabilizes opening of the channel's central gate. This same gate, "the neck," is activated by intracellular [Ca 2+ ], indicating that BEST1 is controlled by ligands from both sides of the membrane. The studies demonstrate that BEST1, which shares no structural homology with GABA A receptors, is a GABA-activated chloride channel. The physiological implications of this finding remain to be studied.


  • Organizational Affiliation

    Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bestrophin-1
A, B, C, D, E
406Homo sapiensMutation(s): 0 
Gene Names: BEST1VMD2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O76090 (Homo sapiens)
Explore O76090 
Go to UniProtKB:  O76090
PHAROS:  O76090
GTEx:  ENSG00000167995 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO76090
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.62 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-09
    Type: Initial release
  • Version 1.1: 2025-04-30
    Changes: Data collection, Database references