5RMJ
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 helicase in complex with Z68299550
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | F_UNCLASSIFIED | e5rmjB4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e5rmjB2 | A: alpha bundles | X: MERS-CoV helicase helical bundle domain (From Topology) | H: MERS-CoV helicase helical bundle domain (From Topology) | T: MERS-CoV helicase helical bundle domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | AAA_12 | e5rmjB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
A [auth B] | AAA_11 | e5rmjB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11 | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e5rmjB5 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e5rmjA6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e5rmjA3 | A: alpha bundles | X: MERS-CoV helicase helical bundle domain (From Topology) | H: MERS-CoV helicase helical bundle domain (From Topology) | T: MERS-CoV helicase helical bundle domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | AAA_12 | e5rmjA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
B [auth A] | AAA_11 | e5rmjA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11 | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e5rmjA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF13087 | AAA domain (AAA_12) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain |
A [auth B], B [auth A] | PF20631 | Coronavirus Nonstructural protein 13, 1B domain (CoV_NSP13_1B) | Coronavirus Nonstructural protein 13, 1B domain | Helicase nonstructural protein 13 (NSP13) is encoded by the replicase polyprotein 1a/ab of coronaviruses and released after a proteolytic process. It plays a critical role catalysing the unwinding of duplex oligonucleotides into single strands in an ... | Domain |
A [auth B], B [auth A] | PF20632 | Coronavirus Non-structural protein 13, zinc-binding domain (CoV_NSP13_ZBD) | Coronavirus Non-structural protein 13, zinc-binding domain | Helicase nonstructural protein 13 (NSP13) is encoded by the replicase polyprotein 1a/ab of coronaviruses and released after a proteolytic process. It plays a critical role catalysing the unwinding of duplex oligonucleotides into single strands in an ... | Domain |
A [auth B], B [auth A] | PF20633 | Coronavirus Nonstructural protein 13, stalk domain (CoV_NSP13_stalk) | Coronavirus Nonstructural protein 13, stalk domain | Helicase nonstructural protein 13 (NSP13) is encoded by the replicase polyprotein 1a/ab of coronaviruses and released after a proteolytic process. It plays a critical role catalysing the unwinding of duplex oligonucleotides into single strands in a N ... | Domain |