6U52

Anti-Sudan ebolavirus Nucleoprotein Single Domain Antibody Sudan B (SB) Complexed with Sudan ebolavirus Nucleoprotein C-terminal Domain 634-738

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6u52b_	Alpha and beta proteins (a+b)	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein	SEBOV (Sudan virus - Boniface, Sudan,1976 ) [TaxId: 128948 ],	SCOPe (2.08)
D	d6u52d_	Alpha and beta proteins (a+b)	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein C-terminal domain-like	Ebola nucleoprotein	SEBOV (Sudan virus - Boniface, Sudan,1976 ) [TaxId: 128948 ],	SCOPe (2.08)
A	d6u52a_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
C	d6u52c_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ebola_NP_C	e6u52B1	A: a+b complex topology	X: C-terminal domain of Ebola nucleoprotein (From Homology)	H: C-terminal domain of Ebola nucleoprotein	T: C-terminal domain of Ebola nucleoprotein	F: Ebola_NP_C	ECOD (1.6)
D	Ebola_NP_C	e6u52D1	A: a+b complex topology	X: C-terminal domain of Ebola nucleoprotein (From Homology)	H: C-terminal domain of Ebola nucleoprotein	T: C-terminal domain of Ebola nucleoprotein	F: Ebola_NP_C	ECOD (1.6)
A	V-set_8	e6u52A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
C	V-set_8	e6u52C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, C	VHH Sudan B (SB), anti-Sudan ebolavirus	VH	Lama glama (llama)	IGHV3S401, IGHJ401	V-DOMAIN VH	IG	VH	IMGT (202415-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF05505	Ebola nucleoprotein (Ebola_NP)	Ebola nucleoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Nucleoprotein	RNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral RNA genome packaging viral process viral life cycle viral genome packaging	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity helical viral capsid
A, C	Anti-Sudan ebolavirus Nucleoprotein Single Domain Antibody Sudan B (SB)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR008609	Ebola nucleoprotein	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.