7CD2

Crystal structure of the S103F mutant of Bacillus subtilis (natto) YabJ protein.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7cd2a_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
B	d7cd2b_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
C	d7cd2c_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
D	d7cd2d_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
E	d7cd2e_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
F	d7cd2f_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
G	d7cd2g_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
H	d7cd2h_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
I	d7cd2i_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
J	d7cd2j_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
K	d7cd2k_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
L	d7cd2l_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
M	d7cd2m_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
N	d7cd2n_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
O	d7cd2o_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
P	d7cd2p_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
Q	d7cd2q_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
R	d7cd2r_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
S	d7cd2s_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
T	d7cd2t_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01042	e7cd2A1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
B	PF01042	e7cd2B1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
C	PF01042	e7cd2C1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
D	PF01042	e7cd2D1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
E	PF01042	e7cd2E1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
F	PF01042	e7cd2F1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
G	PF01042	e7cd2G1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
H	PF01042	e7cd2H1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
I	PF01042	e7cd2I1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
J	PF01042	e7cd2J1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
K	PF01042	e7cd2K1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
L	PF01042	e7cd2L1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
M	PF01042	e7cd2M1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
N	PF01042	e7cd2N1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
O	PF01042	e7cd2O1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
P	PF01042	e7cd2P1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
Q	PF01042	e7cd2Q1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
R	PF01042	e7cd2R1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
S	PF01042	e7cd2S1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)
T	PF01042	e7cd2T1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: PF01042	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF01042	Endoribonuclease L-PSP (Ribonuc_L-PSP)	Endoribonuclease L-PSP	Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...	Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR019897	RidA, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR006056	RidA family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR006175	YjgF/YER057c/UK114 family	Family

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7CD2

Crystal structure of the S103F mutant of Bacillus subtilis (natto) YabJ protein.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage