7CD3

Crystal structure of the S103F mutant of Bacillus subtilis (natto) YabJ protein.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd7cd3b_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ], SCOPe (2.08)
Cd7cd3c_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ], SCOPe (2.08)
Ed7cd3e_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ], SCOPe (2.08)
Ad7cd3a_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ], SCOPe (2.08)
Dd7cd3d_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like YjgF-like automated matches automated matches (Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF01042e7cd3B1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
CPF01042e7cd3C1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
EPF01042e7cd3E1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
APF01042e7cd3A1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)
DPF01042e7cd3D1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: PF01042ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01042Endoribonuclease L-PSP (Ribonuc_L-PSP)Endoribonuclease L-PSPEndoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR019897RidA, conserved siteConserved Site
A, B, C, D, E
IPR006056RidA familyFamily
A, B, C, D, E
IPR035959RutC-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR006175YjgF/YER057c/UK114 familyFamily