7JIL

70S ribosome Flavobacterium johnsoniae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2 FamilyRibosomal protein L38101955 4002103 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyTranslational proteins8101956 3000811 SCOP2 (2022-06-29)
C [auth D]SCOP2 FamilyRibosomal protein L48101971 4003628 SCOP2 (2022-06-29)
C [auth D]SCOP2 SuperfamilyRibosomal protein L48101972 3001146 SCOP2 (2022-06-29)
F [auth G]SCOP2 FamilyRibosomal protein L9 N-domain8101957 4001757 SCOP2 (2022-06-29)
F [auth G]SCOP2 SuperfamilyL9 N-domain-like8101958 3000338 SCOP2 (2022-06-29)
G [auth J]SCOP2 FamilyRibosomal protein L138101937 4003623 SCOP2 (2022-06-29)
G [auth J]SCOP2 SuperfamilyRibosomal protein L138101938 3001134 SCOP2 (2022-06-29)
H [auth K]SCOP2 FamilyRibosomal protein L148102021 4001826 SCOP2 (2022-06-29)
H [auth K]SCOP2 Superfamily50S Ribosomal protein L14-like8102022 3000433 SCOP2 (2022-06-29)
I [auth L]SCOP2 FamilyRibosomal proteins L15p and L18e8101973 4003555 SCOP2 (2022-06-29)
I [auth L]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8101974 3001045 SCOP2 (2022-06-29)
J [auth M]SCOP2 FamilyRibosomal protein L16p8101917 4003717 SCOP2 (2022-06-29)
J [auth M]SCOP2 SuperfamilyRibosomal protein L16p/L10e8101918 3000884 SCOP2 (2022-06-29)
K [auth N]SCOP2 FamilyProkaryotic ribosomal protein L178101943 4003526 SCOP2 (2022-06-29)
K [auth N]SCOP2 SuperfamilyProkaryotic ribosomal protein L178101944 3000995 SCOP2 (2022-06-29)
L [auth O]SCOP2 FamilyRibosomal protein L18p and S118101975 4000555 SCOP2 (2022-06-29)
L [auth O]SCOP2 SuperfamilyTranslational machinery components8101976 3000571 SCOP2 (2022-06-29)
N [auth Q]SCOP2 FamilyRibosomal protein L208101923 4001930 SCOP2 (2022-06-29)
N [auth Q]SCOP2 SuperfamilyRibosomal protein L208101924 3000563 SCOP2 (2022-06-29)
O [auth R]SCOP2 FamilyRibosomal protein l21p8101939 4001630 SCOP2 (2022-06-29)
O [auth R]SCOP2 Superfamilyl21p-like8101940 3002005 SCOP2 (2022-06-29)
Q [auth T]SCOP2 FamilyL23p8101931 4000943 SCOP2 (2022-06-29)
Q [auth T]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8101932 3000210 SCOP2 (2022-06-29)
R [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e8101915 4001752 SCOP2 (2022-06-29)
R [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8101916 3000334 SCOP2 (2022-06-29)
T [auth W]SCOP2 FamilyRibosomal L27 protein8101965 4001900 SCOP2 (2022-06-29)
T [auth W]SCOP2 SuperfamilyRibosomal L27 protein-like8101966 3000539 SCOP2 (2022-06-29)
U [auth X]SCOP2 FamilyRibosomal protein L288101925 4003961 SCOP2 (2022-06-29)
U [auth X]SCOP2 SuperfamilyL28p-like8101926 3001966 SCOP2 (2022-06-29)
W [auth Z]SCOP2 FamilyRibosomal protein L30p/L7e8101945 4001360 SCOP2 (2022-06-29)
W [auth Z]SCOP2 SuperfamilyRibosomal protein L30p/L7e8101946 3001378 SCOP2 (2022-06-29)
CA [auth a]SCOP2 FamilyRibosomal protein L31p8101941 4003966 SCOP2 (2022-06-29)
CA [auth a]SCOP2 SuperfamilyL28p-like8101942 3001966 SCOP2 (2022-06-29)
DA [auth b]SCOP2 FamilyRibosomal protein L32p8101913 4000508 SCOP2 (2022-06-29)
DA [auth b]SCOP2 SuperfamilyZn-binding ribosomal proteins8101914 3001320 SCOP2 (2022-06-29)
EA [auth c]SCOP2 FamilyRibosomal protein L33p8101927 4000511 SCOP2 (2022-06-29)
EA [auth c]SCOP2 SuperfamilyZn-binding ribosomal proteins8101928 3001320 SCOP2 (2022-06-29)
GA [auth e]SCOP2 FamilyRibosomal protein L35p8101933 4003406 SCOP2 (2022-06-29)
GA [auth e]SCOP2 SuperfamilyL35p-like8101934 3000790 SCOP2 (2022-06-29)
HA [auth f]SCOP2 FamilyRibosomal protein L368101995 4003715 SCOP2 (2022-06-29)
HA [auth f]SCOP2 SuperfamilyRibosomal protein L368101996 3001346 SCOP2 (2022-06-29)
JA [auth i]SCOP2 FamilyRibosomal protein S48101919 4001399 SCOP2 (2022-06-29)
JA [auth i]SCOP2 SuperfamilyAlpha-L RNA-binding motif8101920 3001473 SCOP2 (2022-06-29)
MA [auth l]SCOP2 FamilyRibosomal protein S78101953 4001112 SCOP2 (2022-06-29)
MA [auth l]SCOP2 SuperfamilyRibosomal protein S78101954 3000799 SCOP2 (2022-06-29)
NA [auth m]SCOP2 FamilyRibosomal protein S88101947 4002027 SCOP2 (2022-06-29)
NA [auth m]SCOP2 SuperfamilyRibosomal protein S88101948 3000709 SCOP2 (2022-06-29)
OA [auth n]SCOP2 FamilyTranslational machinery components8101967 4000951 SCOP2 (2022-06-29)
OA [auth n]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8101968 3000100 SCOP2 (2022-06-29)
QA [auth p]SCOP2 FamilyRibosomal protein L18p and S118101935 4000555 SCOP2 (2022-06-29)
QA [auth p]SCOP2 SuperfamilyTranslational machinery components8101936 3000571 SCOP2 (2022-06-29)
RA [auth q]SCOP2 FamilyCold shock DNA-binding domain-like8101903 4001909 SCOP2 (2022-06-29)
RA [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins8101904 3000135 SCOP2 (2022-06-29)
TA [auth s]SCOP2 FamilyRibosomal protein S14p/S29e8101921 4003647 SCOP2 (2022-06-29)
TA [auth s]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8101922 3000068 SCOP2 (2022-06-29)
UA [auth t]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138101963 4000767 SCOP2 (2022-06-29)
UA [auth t]SCOP2 SuperfamilyS15/NS1 RNA-binding domain8101964 3001284 SCOP2 (2022-06-29)
VA [auth u]SCOP2 FamilyRibosomal protein S168101961 4001077 SCOP2 (2022-06-29)
VA [auth u]SCOP2 SuperfamilyRibosomal protein S168101962 3000680 SCOP2 (2022-06-29)
WA [auth v]SCOP2 FamilyCold shock DNA-binding domain-like8101949 4001909 SCOP2 (2022-06-29)
WA [auth v]SCOP2 SuperfamilyNucleic acid-binding proteins8101950 3000135 SCOP2 (2022-06-29)
YA [auth x]SCOP2 FamilyRibosomal protein S198101951 4001081 SCOP2 (2022-06-29)
YA [auth x]SCOP2 SuperfamilyRibosomal protein S198101952 3000686 SCOP2 (2022-06-29)
M [auth P]SCOP2 FamilyRibosomal protein L198101959 4001761 SCOP2 (2022-06-29)
M [auth P]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8101960 3000334 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]PF00181e7jilB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
A [auth B]PF03947e7jilB1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
B [auth C]PF00297e7jilC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
C [auth D]PF00573e7jilD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
D [auth E]PF00281,PF00673e7jilE1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
E [auth F]PF00347e7jilF2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
F [auth G]PF01281e7jilG1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
G [auth J]PF00572e7jilJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
H [auth K]PF00238e7jilK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
I [auth L]PF00828e7jilL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
J [auth M]PF00252e7jilM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
K [auth N]PF01196e7jilN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
L [auth O]PF00861e7jilO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
N [auth Q]PF00453e7jilQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
O [auth R]PF00829e7jilR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
P [auth S]PF00237e7jilS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
Q [auth T]PF00276e7jilT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
R [auth U]PF00467,PF17136e7jilU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
S [auth V]PF01386e7jilV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
S [auth V]PF14693e7jilV2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
T [auth W]PF01016e7jilW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
U [auth X]PF00830e7jilX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
V [auth Y]PF00831e7jilY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
W [auth Z]PF00327e7jilZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
CA [auth a]PF01197e7jila1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
DA [auth b]PF01783e7jilb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
EA [auth c]PF00471e7jilc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
FA [auth d]PF00468e7jild1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
GA [auth e]PF01632e7jile1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
HA [auth f]PF00444e7jilf1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
JA [auth i]PF00163,PF01479e7jili1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
KA [auth j]PF03719e7jilj2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
KA [auth j]PF00333e7jilj1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
LA [auth k]PF01250e7jilk1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
MA [auth l]PF00177e7jill1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
NA [auth m]PF00410e7jilm1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
NA [auth m]PF00410e7jilm2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
OA [auth n]PF00380e7jiln1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
PA [auth o]PF00338e7jilo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
QA [auth p]PF00411e7jilp1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
RA [auth q]PF00164e7jilq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
SA [auth r]PF00416e7jilr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
TA [auth s]PF00253e7jils1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
UA [auth t]PF00312e7jilt1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
VA [auth u]PF00886e7jilu1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
WA [auth v]PF00366e7jilv1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
XA [auth w]PF01084e7jilw1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
YA [auth x]PF00203e7jilx1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
ZA [auth y]PF01649e7jily1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
AB [auth z]PF01165e7jilz1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
M [auth P]PF01245e7jilP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
IA [auth h]PF00189e7jilh1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
IA [auth h]PF07650e7jilh2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
A [auth B]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
B [auth C]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
C [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
E [auth F]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
F [auth G]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
G [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
I [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
J [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
K [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
L [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
N [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
O [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
P [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Q [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
R [auth U]PF00467KOW motif (KOW)KOW motif- Family
S [auth V]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
S [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
T [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
U [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
V [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
W [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
AA [auth 4]PF14128Domain of unknown function (DUF4295) (DUF4295)Domain of unknown function (DUF4295)- Family
CA [auth a]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
DA [auth b]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
EA [auth c]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
FA [auth d]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
GA [auth e]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
JA [auth i]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
JA [auth i]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
KA [auth j]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
KA [auth j]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
LA [auth k]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
MA [auth l]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
NA [auth m]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OA [auth n]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PA [auth o]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
QA [auth p]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
RA [auth q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
TA [auth s]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
UA [auth t]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
VA [auth u]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
WA [auth v]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
XA [auth w]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
YA [auth x]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
ZA [auth y]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
AB [auth z]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
M [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
IA [auth h]PF07650KH domain (KH_2)KH domain- Domain
IA [auth h]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]50S ribosomal protein L2
B [auth C]50S ribosomal protein L3
C [auth D]50S ribosomal protein L4
D [auth E]50S ribosomal protein L5---
E [auth F]50S ribosomal protein L6
F [auth G]50S ribosomal protein L9
G [auth J]50S ribosomal protein L13
H [auth K]50S ribosomal protein L14
I [auth L]50S ribosomal protein L15
J [auth M]50S ribosomal protein L16
K [auth N]50S ribosomal protein L17
L [auth O]50S ribosomal protein L18
N [auth Q]50S ribosomal protein L20
O [auth R]50S ribosomal protein L21
P [auth S]50S ribosomal protein L22
Q [auth T]50S ribosomal protein L23
R [auth U]50S ribosomal protein L24
S [auth V]50S ribosomal protein L25
T [auth W]50S ribosomal protein L27
U [auth X]50S ribosomal protein L28
V [auth Y]50S ribosomal protein L29
W [auth Z]50S ribosomal protein L30
X [auth 1]RNA (2862-MER)---
Y [auth 2]RNA (1519-MER)---
Z [auth 3]RNA (111-MER)---
AA [auth 4]50S ribosomal protein L38- - -
BA [auth 5]30S ribosomal protein S22---
CA [auth a]50S ribosomal protein L31
DA [auth b]50S ribosomal protein L32
EA [auth c]50S ribosomal protein L33
FA [auth d]50S ribosomal protein L34
GA [auth e]50S ribosomal protein L35
HA [auth f]50S ribosomal protein L36---
JA [auth i]30S ribosomal protein S4
KA [auth j]30S ribosomal protein S5
LA [auth k]30S ribosomal protein S6
MA [auth l]30S ribosomal protein S7
NA [auth m]30S ribosomal protein S8
OA [auth n]30S ribosomal protein S9
PA [auth o]30S ribosomal protein S10
QA [auth p]30S ribosomal protein S11
RA [auth q]30S ribosomal protein S12
SA [auth r]30S ribosomal protein S13---
TA [auth s]30S ribosomal protein S14
UA [auth t]30S ribosomal protein S15
VA [auth u]30S ribosomal protein S16
WA [auth v]30S ribosomal protein S17
XA [auth w]30S ribosomal protein S18
YA [auth x]30S ribosomal protein S19
ZA [auth y]30S ribosomal protein S20
AB [auth z]30S ribosomal protein S21
M [auth P]50S ribosomal protein L19
IA [auth h]30S ribosomal protein S3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth B]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth B]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth B]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
A [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth B]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth B]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
A [auth B]IPR002171Large ribosomal subunit protein uL2Family
B [auth C]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth C]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
B [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth C]IPR000597Large ribosomal subunit protein uL3Family
C [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth D]IPR002136Large ribosomal subunit protein uL4Family
C [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
E [auth F]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
E [auth F]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
E [auth F]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth F]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
E [auth F]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
F [auth G]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
F [auth G]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
F [auth G]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
F [auth G]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
F [auth G]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
F [auth G]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
F [auth G]IPR000244Large ribosomal subunit protein bL9Family
G [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth J]IPR005822Large ribosomal subunit protein uL13Family
G [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
H [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth K]IPR000218Large ribosomal subunit protein uL14Family
H [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
I [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
I [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth L]IPR030878Large ribosomal subunit protein uL15Family
I [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
J [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
J [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
J [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth M]IPR047873Large ribosomal subunit protein uL16Family
K [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
K [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
K [auth N]IPR000456Large ribosomal subunit protein bL17Family
L [auth O]IPR005484Large ribosomal subunit protein uL18Family
L [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
N [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
N [auth Q]IPR005813Large ribosomal subunit protein bL20Family
O [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
O [auth R]IPR001787Large ribosomal subunit protein bL21Family
O [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
O [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
P [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
P [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth S]IPR001063Large ribosomal subunit protein uL22Family
P [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Q [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth U]IPR003256Large ribosomal subunit protein uL24Family
R [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth U]IPR005824KOWDomain
R [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
S [auth V]IPR001021Ribosomal protein bL25, long-formFamily
S [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
S [auth V]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
S [auth V]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
S [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
T [auth W]IPR001684Large ribosomal subunit protein bL27Family
T [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
U [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
U [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
U [auth X]IPR026569Large ribosomal subunit protein bL28Family
U [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
V [auth Y]IPR001854Large ribosomal subunit protein uL29Family
V [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
W [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AA [auth 4]IPR025379Protein of unknown function DUF4295Family
CA [auth a]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
CA [auth a]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
CA [auth a]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DA [auth b]IPR002677Large ribosomal subunit protein bL32Family
DA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth b]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
EA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
EA [auth c]IPR001705Large ribosomal subunit protein bL33Family
FA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
FA [auth d]IPR000271Large ribosomal subunit protein bL34Family
GA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
GA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
GA [auth e]IPR001706Large ribosomal subunit protein bL35Family
GA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
JA [auth i]IPR002942RNA-binding S4 domainDomain
JA [auth i]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
JA [auth i]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
JA [auth i]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
JA [auth i]IPR022801Small ribosomal subunit protein uS4Family
KA [auth j]IPR000851Small ribosomal subunit protein uS5Family
KA [auth j]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
KA [auth j]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
KA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
KA [auth j]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
KA [auth j]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
KA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LA [auth k]IPR000529Small ribosomal subunit protein bS6Family
LA [auth k]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
LA [auth k]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
LA [auth k]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
MA [auth l]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
MA [auth l]IPR000235Small ribosomal subunit protein uS7Family
MA [auth l]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
MA [auth l]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
MA [auth l]IPR023798Small ribosomal subunit protein uS7 domainDomain
NA [auth m]IPR000630Small ribosomal subunit protein uS8Family
NA [auth m]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
NA [auth m]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
OA [auth n]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
OA [auth n]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OA [auth n]IPR000754Small ribosomal subunit protein uS9Family
OA [auth n]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PA [auth o]IPR001848Small ribosomal subunit protein uS10Family
PA [auth o]IPR027486Small ribosomal subunit protein uS10 domainDomain
PA [auth o]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PA [auth o]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
QA [auth p]IPR001971Small ribosomal subunit protein uS11Family
QA [auth p]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
QA [auth p]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
QA [auth p]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
RA [auth q]IPR006032Small ribosomal subunit protein uS12Family
RA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RA [auth q]IPR005679Ribosomal protein uS12, bacterial-typeFamily
TA [auth s]IPR001209Small ribosomal subunit protein uS14Family
TA [auth s]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
TA [auth s]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
TA [auth s]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
UA [auth t]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
UA [auth t]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UA [auth t]IPR000589Small ribosomal subunit protein uS15Family
VA [auth u]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
VA [auth u]IPR000307Small ribosomal subunit protein bS16Family
WA [auth v]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
WA [auth v]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
WA [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth v]IPR000266Small ribosomal subunit protein uS17Family
XA [auth w]IPR001648Small ribosomal subunit protein bS18Family
XA [auth w]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
YA [auth x]IPR002222Small ribosomal subunit protein uS19Family
YA [auth x]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
YA [auth x]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
YA [auth x]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
ZA [auth y]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
ZA [auth y]IPR002583Small ribosomal subunit protein bS20Family
AB [auth z]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
AB [auth z]IPR001911Small ribosomal subunit protein bS21Family
M [auth P]IPR001857Large ribosomal subunit protein bL19Family
M [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
M [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth h]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IA [auth h]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IA [auth h]IPR004087K Homology domainDomain
IA [auth h]IPR004044K Homology domain, type 2Domain
IA [auth h]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IA [auth h]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IA [auth h]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
IA [auth h]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site