8ORQ

Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA-directed RNA polymerase subunit Rpo1N
J [auth K]DNA-directed RNA polymerase subunit Rpo6
K [auth P]DNA-directed RNA polymerase subunit Rpo12
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit Rpo1C
DNA-directed RNA polymerase subunit Rpo3
DNA-directed RNA polymerase subunit Rpo7
DNA-directed RNA polymerase subunit Rpo4
G [auth L]DNA-directed RNA polymerase subunit Rpo11
DNA-directed RNA polymerase subunit Rpo5
I [auth N]DNA-directed RNA polymerase subunit Rpo10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007066RNA polymerase Rpb1, domain 3Domain
IPR007081RNA polymerase Rpb1, domain 5Domain
IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
IPR012758DNA-directed RNA polymerase subunit Rpo1NFamily
IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
IPR007083RNA polymerase Rpb1, domain 4Domain
IPR000722RNA polymerase, alpha subunitDomain
IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
IPR006592RNA polymerase, N-terminalDomain
IPR007080RNA polymerase Rpb1, domain 1Domain
J [auth K]IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
J [auth K]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
J [auth K]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
J [auth K]IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
K [auth P]IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4Family
K [auth P]IPR023464DNA-directed RNA polymerase subunit Rpo12Family
K [auth P]IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4Homologous Superfamily
IPR007642RNA polymerase Rpb2, domain 2Domain
IPR015712DNA-directed RNA polymerase, subunit 2Family
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
IPR007645RNA polymerase Rpb2, domain 3Domain
IPR007646RNA polymerase Rpb2, domain 4Domain
IPR007647RNA polymerase Rpb2, domain 5Domain
IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
IPR007644RNA polymerase, beta subunit, protrusionDomain
IPR007641RNA polymerase Rpb2, domain 7Domain
IPR019969DNA-directed RNA polymerase subunit Rpo2Family
IPR007081RNA polymerase Rpb1, domain 5Domain
IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
IPR012757DNA-directed RNA polymerase subunit Rpo1CFamily
IPR011262DNA-directed RNA polymerase, insert domainDomain
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
IPR022842DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1Family
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved siteConserved Site
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
IPR046399DNA-directed RNA polymerase subunit Rpo7Family
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyHomologous Superfamily
IPR004519DNA-directed RNA polymerase, subunit E/RPC8Family
IPR003029S1 domainDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR045113RNA polymerase subunit Rpb7-likeFamily
IPR005576RNA polymerase Rpb7-like , N-terminalDomain
IPR005574RNA polymerase subunit Rpb4/RPC9Family
IPR044876HRDC domain superfamilyHomologous Superfamily
IPR010997HRDC-like superfamilyHomologous Superfamily
IPR010924DNA-directed RNA polymerase subunit Rpo4Family
G [auth L]IPR022905DNA-directed RNA polymerase subunit Rpo11-likeFamily
G [auth L]IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
G [auth L]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
G [auth L]IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved siteConserved Site
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
IPR020608RNA polymerase, subunit H/Rpb5, conserved siteConserved Site
I [auth N]IPR023580RNA polymerase subunit RPB10Homologous Superfamily
I [auth N]IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
I [auth N]IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family